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SEMA6D (sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D)

Identity

Other names-
HGNC (Hugo) SEMA6D
LocusID (NCBI) 80031
Location 15q21.1
Location_base_pair Starts at 47476403 and ends at 48066420 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEMA6D   16770
Cards
Entrez_Gene (NCBI)SEMA6D  80031  sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
GeneCards (Weizmann)SEMA6D
Ensembl (Hinxton)ENSG00000137872 [Gene_View]  chr15:47476403-48066420 [Contig_View]  SEMA6D [Vega]
ICGC DataPortalENSG00000137872
cBioPortalSEMA6D
AceView (NCBI)SEMA6D
Genatlas (Paris)SEMA6D
WikiGenes80031
SOURCE (Princeton)NM_001198999 NM_020858 NM_024966 NM_153616 NM_153617 NM_153618 NM_153619
Genomic and cartography
GoldenPath (UCSC)SEMA6D  -  15q21.1   chr15:47476403-48066420 +  15q21.1   [Description]    (hg19-Feb_2009)
EnsemblSEMA6D - 15q21.1 [CytoView]
Mapping of homologs : NCBISEMA6D [Mapview]
OMIM609295   
Gene and transcription
Genbank (Entrez)AB040912 AF389426 AF389427 AF389428 AF389429
RefSeq transcript (Entrez)NM_001198999 NM_020858 NM_024966 NM_153616 NM_153617 NM_153618 NM_153619
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NG_029119 NT_010194 NW_001838218 NW_004929398
Consensus coding sequences : CCDS (NCBI)SEMA6D
Cluster EST : UnigeneHs.511265 [ NCBI ]
CGAP (NCI)Hs.511265
Alternative Splicing : Fast-db (Paris)GSHG0009848
Alternative Splicing GalleryENSG00000137872
Gene ExpressionSEMA6D [ NCBI-GEO ]     SEMA6D [ SEEK ]   SEMA6D [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFY4 (Uniprot)
NextProtQ8NFY4  [Medical]
With graphics : InterProQ8NFY4
Splice isoforms : SwissVarQ8NFY4 (Swissvar)
Domaine pattern : Prosite (Expaxy)SEMA (PS51004)   
Domains : Interpro (EBI)Plexin-like_fold [organisation]   Plexin_repeat [organisation]   Semap_dom [organisation]   Semaphorin [organisation]   WD40/YVTN_repeat-like_dom [organisation]  
Related proteins : CluSTrQ8NFY4
Domain families : Pfam (Sanger)PSI (PF01437)    Sema (PF01403)   
Domain families : Pfam (NCBI)pfam01437    pfam01403   
Domain families : Smart (EMBL)PSI (SM00423)  Sema (SM00630)  
DMDM Disease mutations80031
Blocks (Seattle)Q8NFY4
Human Protein AtlasENSG00000137872 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8NFY4
HPRD10221
IPIIPI00178302   IPI00332846   IPI00170551   IPI00465042   IPI00657834   IPI00374169   IPI00170617   IPI00783744   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFY4
IntAct (EBI)Q8NFY4
FunCoupENSG00000137872
BioGRIDSEMA6D
InParanoidQ8NFY4
Interologous Interaction database Q8NFY4
IntegromeDBSEMA6D
STRING (EMBL)SEMA6D
Ontologies - Pathways
Ontology : AmiGOreceptor activity  cytoplasm  plasma membrane  axon guidance  positive regulation of smooth muscle cell migration  negative regulation of smooth muscle cell migration  integral component of membrane  ventricular system development  semaphorin receptor binding  
Ontology : EGO-EBIreceptor activity  cytoplasm  plasma membrane  axon guidance  positive regulation of smooth muscle cell migration  negative regulation of smooth muscle cell migration  integral component of membrane  ventricular system development  semaphorin receptor binding  
Pathways : KEGGAxon guidance   
Protein Interaction DatabaseSEMA6D
Wikipedia pathwaysSEMA6D
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SEMA6D
snp3D : Map Gene to Disease80031
SNP (GeneSNP Utah)SEMA6D
SNP : HGBaseSEMA6D
Genetic variants : HAPMAPSEMA6D
Exome VariantSEMA6D
1000_GenomesSEMA6D 
ICGC programENSG00000137872 
Somatic Mutations in Cancer : COSMICSEMA6D 
CONAN: Copy Number AnalysisSEMA6D 
Mutations and Diseases : HGMDSEMA6D
Genomic VariantsSEMA6D  SEMA6D [DGVbeta]
dbVarSEMA6D
ClinVarSEMA6D
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM609295   
MedgenSEMA6D
GENETestsSEMA6D
Disease Genetic AssociationSEMA6D
Huge Navigator SEMA6D [HugePedia]  SEMA6D [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSEMA6D
Homology/Alignments : Family Browser (UCSC)SEMA6D
Phylogenetic Trees/Animal Genes : TreeFamSEMA6D
Chemical/Protein Interactions : CTD80031
Chemical/Pharm GKB GenePA134951035
Clinical trialSEMA6D
Cancer Resource (Charite)ENSG00000137872
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
CoreMineSEMA6D
iHOPSEMA6D
OncoSearchSEMA6D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:47:05 CEST 2014

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