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SEMG1 (semenogelin I)

Identity

Alias_namesSEMG
Alias_symbol (synonym)CT103
Other aliasSGI
dJ172H20.2
HGNC (Hugo) SEMG1
LocusID (NCBI) 6406
Atlas_Id 46426
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45206964 and ends at 45209773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMG1   10742
Cards
Entrez_Gene (NCBI)SEMG1  6406  semenogelin I
AliasesCT103; SEMG; SGI; dJ172H20.2
GeneCards (Weizmann)SEMG1
Ensembl hg19 (Hinxton)ENSG00000124233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124233 [Gene_View]  chr20:45206964-45209773 [Contig_View]  SEMG1 [Vega]
ICGC DataPortalENSG00000124233
TCGA cBioPortalSEMG1
AceView (NCBI)SEMG1
Genatlas (Paris)SEMG1
WikiGenes6406
SOURCE (Princeton)SEMG1
Genetics Home Reference (NIH)SEMG1
Genomic and cartography
GoldenPath hg38 (UCSC)SEMG1  -     chr20:45206964-45209773 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEMG1  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblSEMG1 - 20q13.12 [CytoView hg19]  SEMG1 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISEMG1 [Mapview hg19]  SEMG1 [Mapview hg38]
OMIM182140   
Gene and transcription
Genbank (Entrez)AA687874 BC005229 BC007096 BC011442 BC055416
RefSeq transcript (Entrez)NM_003007 NM_198139
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEMG1
Cluster EST : UnigeneHs.1968 [ NCBI ]
CGAP (NCI)Hs.1968
Alternative Splicing GalleryENSG00000124233
Gene ExpressionSEMG1 [ NCBI-GEO ]   SEMG1 [ EBI - ARRAY_EXPRESS ]   SEMG1 [ SEEK ]   SEMG1 [ MEM ]
Gene Expression Viewer (FireBrowse)SEMG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6406
GTEX Portal (Tissue expression)SEMG1
Human Protein AtlasENSG00000124233-SEMG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04279   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04279  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04279
Splice isoforms : SwissVarP04279
PhosPhoSitePlusP04279
Domains : Interpro (EBI)Semenogelin   
Domain families : Pfam (Sanger)Semenogelin (PF05474)   
Domain families : Pfam (NCBI)pfam05474   
Conserved Domain (NCBI)SEMG1
DMDM Disease mutations6406
Blocks (Seattle)SEMG1
SuperfamilyP04279
Human Protein Atlas [tissue]ENSG00000124233-SEMG1 [tissue]
Peptide AtlasP04279
HPRD01641
IPIIPI00023020   IPI00414684   
Protein Interaction databases
DIP (DOE-UCLA)P04279
IntAct (EBI)P04279
FunCoupENSG00000124233
BioGRIDSEMG1
STRING (EMBL)SEMG1
ZODIACSEMG1
Ontologies - Pathways
QuickGOP04279
Ontology : AmiGOprotein binding  extracellular region  extracellular space  extracellular space  nucleus  insemination  antimicrobial humoral response  antibacterial humoral response  protein complex  cellular protein metabolic process  metal ion binding  coagulation  protein heterooligomerization  extracellular exosome  negative regulation of calcium ion import  positive regulation of serine-type endopeptidase activity  negative regulation of flagellated sperm motility  negative regulation of flagellated sperm motility  
Ontology : EGO-EBIprotein binding  extracellular region  extracellular space  extracellular space  nucleus  insemination  antimicrobial humoral response  antibacterial humoral response  protein complex  cellular protein metabolic process  metal ion binding  coagulation  protein heterooligomerization  extracellular exosome  negative regulation of calcium ion import  positive regulation of serine-type endopeptidase activity  negative regulation of flagellated sperm motility  negative regulation of flagellated sperm motility  
NDEx NetworkSEMG1
Atlas of Cancer Signalling NetworkSEMG1
Wikipedia pathwaysSEMG1
Orthology - Evolution
OrthoDB6406
GeneTree (enSembl)ENSG00000124233
Phylogenetic Trees/Animal Genes : TreeFamSEMG1
HOVERGENP04279
HOGENOMP04279
Homologs : HomoloGeneSEMG1
Homology/Alignments : Family Browser (UCSC)SEMG1
Gene fusions - Rearrangements
Tumor Fusion PortalSEMG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEMG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEMG1
dbVarSEMG1
ClinVarSEMG1
1000_GenomesSEMG1 
Exome Variant ServerSEMG1
ExAC (Exome Aggregation Consortium)ENSG00000124233
GNOMAD BrowserENSG00000124233
Genetic variants : HAPMAP6406
Genomic Variants (DGV)SEMG1 [DGVbeta]
DECIPHERSEMG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEMG1 
Mutations
ICGC Data PortalSEMG1 
TCGA Data PortalSEMG1 
Broad Tumor PortalSEMG1
OASIS PortalSEMG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEMG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEMG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEMG1
DgiDB (Drug Gene Interaction Database)SEMG1
DoCM (Curated mutations)SEMG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEMG1 (select a term)
intoGenSEMG1
Cancer3DSEMG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182140   
Orphanet
DisGeNETSEMG1
MedgenSEMG1
Genetic Testing Registry SEMG1
NextProtP04279 [Medical]
TSGene6406
GENETestsSEMG1
Target ValidationSEMG1
Huge Navigator SEMG1 [HugePedia]
snp3D : Map Gene to Disease6406
BioCentury BCIQSEMG1
ClinGenSEMG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6406
Chemical/Pharm GKB GenePA35664
Clinical trialSEMG1
Miscellaneous
canSAR (ICR)SEMG1 (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMG1
EVEXSEMG1
GoPubMedSEMG1
iHOPSEMG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:34:00 CET 2017

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