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SEMG2 (semenogelin 2)

Identity

Alias_symbol (synonym)SGII
Other alias
HGNC (Hugo) SEMG2
LocusID (NCBI) 6407
Atlas_Id 52311
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45221369 and ends at 45224458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMG2   10743
Cards
Entrez_Gene (NCBI)SEMG2  6407  semenogelin 2
AliasesSGII
GeneCards (Weizmann)SEMG2
Ensembl hg19 (Hinxton)ENSG00000124157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124157 [Gene_View]  ENSG00000124157 [Sequence]  chr20:45221369-45224458 [Contig_View]  SEMG2 [Vega]
ICGC DataPortalENSG00000124157
TCGA cBioPortalSEMG2
AceView (NCBI)SEMG2
Genatlas (Paris)SEMG2
WikiGenes6407
SOURCE (Princeton)SEMG2
Genetics Home Reference (NIH)SEMG2
Genomic and cartography
GoldenPath hg38 (UCSC)SEMG2  -     chr20:45221369-45224458 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEMG2  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblSEMG2 - 20q13.12 [CytoView hg19]  SEMG2 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISEMG2 [Mapview hg19]  SEMG2 [Mapview hg38]
OMIM182141   
Gene and transcription
Genbank (Entrez)AK312932 BC005262 BC056675 BC070306 M81652
RefSeq transcript (Entrez)NM_003008
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEMG2
Cluster EST : UnigeneHs.537218 [ NCBI ]
CGAP (NCI)Hs.537218
Alternative Splicing GalleryENSG00000124157
Gene ExpressionSEMG2 [ NCBI-GEO ]   SEMG2 [ EBI - ARRAY_EXPRESS ]   SEMG2 [ SEEK ]   SEMG2 [ MEM ]
Gene Expression Viewer (FireBrowse)SEMG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6407
GTEX Portal (Tissue expression)SEMG2
Human Protein AtlasENSG00000124157-SEMG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02383   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02383  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02383
Splice isoforms : SwissVarQ02383
PhosPhoSitePlusQ02383
Domains : Interpro (EBI)Semenogelin   
Domain families : Pfam (Sanger)Semenogelin (PF05474)   
Domain families : Pfam (NCBI)pfam05474   
Conserved Domain (NCBI)SEMG2
DMDM Disease mutations6407
Blocks (Seattle)SEMG2
SuperfamilyQ02383
Human Protein Atlas [tissue]ENSG00000124157-SEMG2 [tissue]
Peptide AtlasQ02383
HPRD01642
IPIIPI00025415   
Protein Interaction databases
DIP (DOE-UCLA)Q02383
IntAct (EBI)Q02383
FunCoupENSG00000124157
BioGRIDSEMG2
STRING (EMBL)SEMG2
ZODIACSEMG2
Ontologies - Pathways
QuickGOQ02383
Ontology : AmiGOprotease binding  protein binding  extracellular space  extracellular space  nucleus  antibacterial humoral response  metal ion binding  sperm capacitation  coagulation  protein heterooligomerization  extracellular exosome  positive regulation of serine-type endopeptidase activity  negative regulation of flagellated sperm motility  
Ontology : EGO-EBIprotease binding  protein binding  extracellular space  extracellular space  nucleus  antibacterial humoral response  metal ion binding  sperm capacitation  coagulation  protein heterooligomerization  extracellular exosome  positive regulation of serine-type endopeptidase activity  negative regulation of flagellated sperm motility  
NDEx NetworkSEMG2
Atlas of Cancer Signalling NetworkSEMG2
Wikipedia pathwaysSEMG2
Orthology - Evolution
OrthoDB6407
GeneTree (enSembl)ENSG00000124157
Phylogenetic Trees/Animal Genes : TreeFamSEMG2
HOVERGENQ02383
HOGENOMQ02383
Homologs : HomoloGeneSEMG2
Homology/Alignments : Family Browser (UCSC)SEMG2
Gene fusions - Rearrangements
Fusion : QuiverSEMG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEMG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEMG2
dbVarSEMG2
ClinVarSEMG2
1000_GenomesSEMG2 
Exome Variant ServerSEMG2
ExAC (Exome Aggregation Consortium)ENSG00000124157
GNOMAD BrowserENSG00000124157
Varsome BrowserSEMG2
Genetic variants : HAPMAP6407
Genomic Variants (DGV)SEMG2 [DGVbeta]
DECIPHERSEMG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEMG2 
Mutations
ICGC Data PortalSEMG2 
TCGA Data PortalSEMG2 
Broad Tumor PortalSEMG2
OASIS PortalSEMG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEMG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEMG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEMG2
DgiDB (Drug Gene Interaction Database)SEMG2
DoCM (Curated mutations)SEMG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEMG2 (select a term)
intoGenSEMG2
Cancer3DSEMG2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182141   
Orphanet
DisGeNETSEMG2
MedgenSEMG2
Genetic Testing Registry SEMG2
NextProtQ02383 [Medical]
TSGene6407
GENETestsSEMG2
Target ValidationSEMG2
Huge Navigator SEMG2 [HugePedia]
snp3D : Map Gene to Disease6407
BioCentury BCIQSEMG2
ClinGenSEMG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6407
Chemical/Pharm GKB GenePA35665
Clinical trialSEMG2
Miscellaneous
canSAR (ICR)SEMG2 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMG2
EVEXSEMG2
GoPubMedSEMG2
iHOPSEMG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:38:10 CET 2018

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