Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SENCR (smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA)

Identity

Alias_namesFLI1-AS1
FLI1 antisense RNA 1 (non-protein coding)
FLI1 antisense RNA 1
Other aliaslncRNA9
HGNC (Hugo) SENCR
LocusID (NCBI) 100507392
Atlas_Id 73116
Location 11q24.3  [Link to chromosome band 11q24]
Location_base_pair Starts at 128691672 and ends at 128696023 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SENCR   44177
Cards
Entrez_Gene (NCBI)SENCR  100507392  smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA
AliasesFLI1-AS1; lncRNA9
GeneCards (Weizmann)SENCR
Ensembl hg19 (Hinxton)ENSG00000254703 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254703 [Gene_View]  ENSG00000254703 [Sequence]  chr11:128691672-128696023 [Contig_View]  SENCR [Vega]
ICGC DataPortalENSG00000254703
TCGA cBioPortalSENCR
AceView (NCBI)SENCR
Genatlas (Paris)SENCR
WikiGenes100507392
SOURCE (Princeton)SENCR
Genetics Home Reference (NIH)SENCR
Genomic and cartography
GoldenPath hg38 (UCSC)SENCR  -     chr11:128691672-128696023 -  11q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SENCR  -     11q24.3   [Description]    (hg19-Feb_2009)
GoldenPathSENCR - 11q24.3 [CytoView hg19]  SENCR - 11q24.3 [CytoView hg38]
ImmunoBaseENSG00000254703
Mapping of homologs : NCBISENCR [Mapview hg19]  SENCR [Mapview hg38]
OMIM615815   
Gene and transcription
Genbank (Entrez)AI860159 BC039676
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SENCR
Cluster EST : UnigeneHs.657715 [ NCBI ]
CGAP (NCI)Hs.657715
Alternative Splicing GalleryENSG00000254703
Gene ExpressionSENCR [ NCBI-GEO ]   SENCR [ EBI - ARRAY_EXPRESS ]   SENCR [ SEEK ]   SENCR [ MEM ]
Gene Expression Viewer (FireBrowse)SENCR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507392
GTEX Portal (Tissue expression)SENCR
Human Protein AtlasENSG00000254703-SENCR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SENCR
DMDM Disease mutations100507392
Blocks (Seattle)SENCR
Human Protein Atlas [tissue]ENSG00000254703-SENCR [tissue]
Protein Interaction databases
FunCoupENSG00000254703
BioGRIDSENCR
STRING (EMBL)SENCR
ZODIACSENCR
Ontologies - Pathways
Huge Navigator SENCR [HugePedia]
snp3D : Map Gene to Disease100507392
BioCentury BCIQSENCR
ClinGenSENCR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507392
Clinical trialSENCR
Miscellaneous
canSAR (ICR)SENCR (select the gene name)
DataMed IndexSENCR
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSENCR
EVEXSENCR
GoPubMedSENCR
iHOPSENCR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:04:54 CEST 2019
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