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SENP7 (SUMO1/sentrin specific peptidase 7)

Identity

Alias_namesSUMO1/sentrin specific protease 7
Other alias-
HGNC (Hugo) SENP7
LocusID (NCBI) 57337
Atlas_Id 53148
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 101324189 and ends at 101513241 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SENP7 (3q12.3) / RFC4 (3q27.3)SENP7 (3q12.3) / SENP7 (3q12.3)SENP7 3q12.3 / RFC4 3q27.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SENP7   30402
Cards
Entrez_Gene (NCBI)SENP7  57337  SUMO1/sentrin specific peptidase 7
Aliases
GeneCards (Weizmann)SENP7
Ensembl hg19 (Hinxton)ENSG00000138468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138468 [Gene_View]  chr3:101324189-101513241 [Contig_View]  SENP7 [Vega]
ICGC DataPortalENSG00000138468
TCGA cBioPortalSENP7
AceView (NCBI)SENP7
Genatlas (Paris)SENP7
WikiGenes57337
SOURCE (Princeton)SENP7
Genetics Home Reference (NIH)SENP7
Genomic and cartography
GoldenPath hg38 (UCSC)SENP7  -     chr3:101324189-101513241 -  3q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SENP7  -     3q12.3   [Description]    (hg19-Feb_2009)
EnsemblSENP7 - 3q12.3 [CytoView hg19]  SENP7 - 3q12.3 [CytoView hg38]
Mapping of homologs : NCBISENP7 [Mapview hg19]  SENP7 [Mapview hg38]
OMIM612846   
Gene and transcription
Genbank (Entrez)AA651903 AB051494 AF199458 AF217504 AI858732
RefSeq transcript (Entrez)NM_001077203 NM_001282801 NM_001282802 NM_001282803 NM_001282804 NM_020654
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SENP7
Cluster EST : UnigeneHs.529551 [ NCBI ]
CGAP (NCI)Hs.529551
Alternative Splicing GalleryENSG00000138468
Gene ExpressionSENP7 [ NCBI-GEO ]   SENP7 [ EBI - ARRAY_EXPRESS ]   SENP7 [ SEEK ]   SENP7 [ MEM ]
Gene Expression Viewer (FireBrowse)SENP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57337
GTEX Portal (Tissue expression)SENP7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQF6
Splice isoforms : SwissVarQ9BQF6
Catalytic activity : Enzyme3.4.22.68 [ Enzyme-Expasy ]   3.4.22.683.4.22.68 [ IntEnz-EBI ]   3.4.22.68 [ BRENDA ]   3.4.22.68 [ KEGG ]   
PhosPhoSitePlusQ9BQF6
Domaine pattern : Prosite (Expaxy)ULP_PROTEASE (PS50600)   
Domains : Interpro (EBI)Peptidase_C48_C   
Domain families : Pfam (Sanger)Peptidase_C48 (PF02902)   
Domain families : Pfam (NCBI)pfam02902   
Conserved Domain (NCBI)SENP7
DMDM Disease mutations57337
Blocks (Seattle)SENP7
PDB (SRS)3EAY   
PDB (PDBSum)3EAY   
PDB (IMB)3EAY   
PDB (RSDB)3EAY   
Structural Biology KnowledgeBase3EAY   
SCOP (Structural Classification of Proteins)3EAY   
CATH (Classification of proteins structures)3EAY   
SuperfamilyQ9BQF6
Human Protein AtlasENSG00000138468
Peptide AtlasQ9BQF6
HPRD07154
IPIIPI00296449   IPI00218776   IPI00218777   IPI00816671   IPI00969153   IPI00852809   IPI00852786   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQF6
IntAct (EBI)Q9BQF6
FunCoupENSG00000138468
BioGRIDSENP7
STRING (EMBL)SENP7
ZODIACSENP7
Ontologies - Pathways
QuickGOQ9BQF6
Ontology : AmiGOG-protein coupled receptor activity  protein binding  intracellular  nucleus  plasma membrane  proteolysis  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  cysteine-type peptidase activity  
Ontology : EGO-EBIG-protein coupled receptor activity  protein binding  intracellular  nucleus  plasma membrane  proteolysis  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  cysteine-type peptidase activity  
NDEx NetworkSENP7
Atlas of Cancer Signalling NetworkSENP7
Wikipedia pathwaysSENP7
Orthology - Evolution
OrthoDB57337
GeneTree (enSembl)ENSG00000138468
Phylogenetic Trees/Animal Genes : TreeFamSENP7
HOVERGENQ9BQF6
HOGENOMQ9BQF6
Homologs : HomoloGeneSENP7
Homology/Alignments : Family Browser (UCSC)SENP7
Gene fusions - Rearrangements
Fusion : MitelmanSENP7/RFC4 [3q12.3/3q27.3]  
Fusion: TCGASENP7 3q12.3 RFC4 3q27.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSENP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SENP7
dbVarSENP7
ClinVarSENP7
1000_GenomesSENP7 
Exome Variant ServerSENP7
ExAC (Exome Aggregation Consortium)SENP7 (select the gene name)
Genetic variants : HAPMAP57337
Genomic Variants (DGV)SENP7 [DGVbeta]
DECIPHERSENP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSENP7 
Mutations
ICGC Data PortalSENP7 
TCGA Data PortalSENP7 
Broad Tumor PortalSENP7
OASIS PortalSENP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSENP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSENP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SENP7
DgiDB (Drug Gene Interaction Database)SENP7
DoCM (Curated mutations)SENP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SENP7 (select a term)
intoGenSENP7
Cancer3DSENP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612846   
Orphanet
MedgenSENP7
Genetic Testing Registry SENP7
NextProtQ9BQF6 [Medical]
TSGene57337
GENETestsSENP7
Target ValidationSENP7
Huge Navigator SENP7 [HugePedia]
snp3D : Map Gene to Disease57337
BioCentury BCIQSENP7
ClinGenSENP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57337
Chemical/Pharm GKB GenePA134925171
Clinical trialSENP7
Miscellaneous
canSAR (ICR)SENP7 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSENP7
EVEXSENP7
GoPubMedSENP7
iHOPSENP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:30:28 CEST 2017

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