Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SEPN1 (-)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 57190
Atlas_Id 73120
Location -  [Link to chromosome band ]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEPN1 (1p36.11) / FTSJ1 (Xp11.23)TM9SF1 (14q12) / SEPN1 (1p36.11)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SEPN1  57190  -
Aliases
GeneCards (Weizmann)SEPN1
Ensembl hg19 (Hinxton)ENSG00000162430 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162430 [Gene_View]  - [Contig_View]  SEPN1 [Vega]
ICGC DataPortalENSG00000162430
TCGA cBioPortalSEPN1
AceView (NCBI)SEPN1
Genatlas (Paris)SEPN1
WikiGenes57190
SOURCE (Princeton)SEPN1
Genetics Home Reference (NIH)SEPN1
Genomic and cartography
GoldenPath hg38 (UCSC)SEPN1  -  
GoldenPath hg19 (UCSC)SEPN1  -  
EnsemblSEPN1 - [CytoView hg19]  SEPN1 - [CytoView hg38]
Mapping of homologs : NCBISEPN1 [Mapview hg19]  SEPN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEPN1
Alternative Splicing GalleryENSG00000162430
Gene ExpressionSEPN1 [ NCBI-GEO ]   SEPN1 [ EBI - ARRAY_EXPRESS ]   SEPN1 [ SEEK ]   SEPN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SEPN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)57190
GTEX Portal (Tissue expression)SEPN1
Human Protein AtlasENSG00000162430-SEPN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SEPN1
DMDM Disease mutations57190
Blocks (Seattle)SEPN1
Human Protein Atlas [tissue]ENSG00000162430-SEPN1 [tissue]
HPRD05867
Protein Interaction databases
FunCoupENSG00000162430
BioGRIDSEPN1
STRING (EMBL)SEPN1
ZODIACSEPN1
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease57190
BioCentury BCIQSEPN1
ClinGenSEPN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57190
Clinical trialSEPN1
Miscellaneous
canSAR (ICR)SEPN1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEPN1
EVEXSEPN1
GoPubMedSEPN1
iHOPSEPN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:58:51 CET 2017

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