Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SEPT10 (septin 10)

Identity

Alias_symbol (synonym)FLJ11619
Other alias-
HGNC (Hugo) Sep-10
LocusID (NCBI) 151011
Atlas_Id 50061
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 110300374 and ends at 110371783 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDC42EP4 17q25.1 / SEPT10 2q13SEC24C 10q22.2 / SEPT10 2q13SEPT10 2q13 / PLCD4 2q35

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)Sep-10   14349
Cards
Entrez_Gene (NCBI)SEPT10  151011  septin 10
Aliases
GeneCards (Weizmann)SEPT10
Ensembl hg19 (Hinxton)ENSG00000186522 [Gene_View]  chr2:110300374-110371783 [Contig_View]  SEPT10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186522 [Gene_View]  chr2:110300374-110371783 [Contig_View]  SEPT10 [Vega]
ICGC DataPortalENSG00000186522
TCGA cBioPortalSEPT10
AceView (NCBI)SEPT10
Genatlas (Paris)SEPT10
WikiGenes151011
SOURCE (Princeton)SEPT10
Genetics Home Reference (NIH)SEPT10
Genomic and cartography
GoldenPath hg19 (UCSC)SEPT10  -     chr2:110300374-110371783 -  2q13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEPT10  -     2q13   [Description]    (hg38-Dec_2013)
EnsemblSEPT10 - 2q13 [CytoView hg19]  SEPT10 - 2q13 [CytoView hg38]
Mapping of homologs : NCBISEPT10 [Mapview hg19]  SEPT10 [Mapview hg38]
OMIM611737   
Gene and transcription
Genbank (Entrez)AB208875 AF146760 AF316880 AK021681 AK022682
RefSeq transcript (Entrez)NM_001321496 NM_001321498 NM_001321499 NM_001321500 NM_001321501 NM_001321502 NM_001321503 NM_001321504 NM_001321505 NM_001321506 NM_001321507 NM_001321508 NM_001321509 NM_001321510 NM_001321511 NM_001321512 NM_001321513 NM_001321514 NM_001321515 NM_144710 NM_178584
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)SEPT10
Cluster EST : UnigeneHs.469615 [ NCBI ]
CGAP (NCI)Hs.469615
Alternative Splicing GalleryENSG00000186522
Gene ExpressionSEPT10 [ NCBI-GEO ]   SEPT10 [ EBI - ARRAY_EXPRESS ]   SEPT10 [ SEEK ]   SEPT10 [ MEM ]
Gene Expression Viewer (FireBrowse)SEPT10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151011
GTEX Portal (Tissue expression)SEPT10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0V9
Splice isoforms : SwissVarQ9P0V9
PhosPhoSitePlusQ9P0V9
Domaine pattern : Prosite (Expaxy)G_SEPTIN (PS51719)   
Domains : Interpro (EBI)G_SEPTIN_dom    P-loop_NTPase    Septin   
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
Conserved Domain (NCBI)SEPT10
DMDM Disease mutations151011
Blocks (Seattle)SEPT10
SuperfamilyQ9P0V9
Human Protein AtlasENSG00000186522
Peptide AtlasQ9P0V9
HPRD15325
IPIIPI00374970   IPI00872036   IPI00921858   IPI00412153   IPI00873459   IPI00926875   IPI00927054   IPI00927577   IPI00927824   IPI00924731   IPI01015889   IPI01013389   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0V9
IntAct (EBI)Q9P0V9
FunCoupENSG00000186522
BioGRIDSEPT10
STRING (EMBL)SEPT10
ZODIACSEPT10
Ontologies - Pathways
QuickGOQ9P0V9
Ontology : AmiGOprotein binding  GTP binding  cytoplasm  cytoskeleton  cell cycle  cell division  
Ontology : EGO-EBIprotein binding  GTP binding  cytoplasm  cytoskeleton  cell cycle  cell division  
NDEx NetworkSEPT10
Atlas of Cancer Signalling NetworkSEPT10
Wikipedia pathwaysSEPT10
Orthology - Evolution
OrthoDB151011
GeneTree (enSembl)ENSG00000186522
Phylogenetic Trees/Animal Genes : TreeFamSep-10
HOVERGENQ9P0V9
HOGENOMQ9P0V9
Homologs : HomoloGeneSEPT10
Homology/Alignments : Family Browser (UCSC)SEPT10
Gene fusions - Rearrangements
Fusion : MitelmanCDC42EP4/SEPT10 [17q25.1/2q13]  [t(2;17)(q13;q25)]  
Fusion : MitelmanPPP1R12A/SEPT10 [12q21.2/2q13]  [t(2;12)(q13;q21)]  
Fusion : MitelmanSEC24C/SEPT10 [10q22.2/2q13]  [t(2;10)(q13;q22)]  
Fusion: TCGACDC42EP4 17q25.1 SEPT10 2q13 LUSC
Fusion: TCGASEC24C 10q22.2 SEPT10 2q13 PRAD
Fusion: TCGASEPT10 2q13 PLCD4 2q35 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEPT10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEPT10
dbVarSEPT10
ClinVarSEPT10
1000_GenomesSEPT10 
Exome Variant ServerSEPT10
ExAC (Exome Aggregation Consortium)SEPT10 (select the gene name)
Genetic variants : HAPMAP151011
Genomic Variants (DGV)SEPT10 [DGVbeta]
DECIPHER (Syndromes)2:110300374-110371783  ENSG00000186522
CONAN: Copy Number AnalysisSEPT10 
Mutations
ICGC Data PortalSep-10 
TCGA Data PortalSep-10 
Broad Tumor PortalSep-10
OASIS PortalSep-10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEPT10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSep-10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEPT10
DgiDB (Drug Gene Interaction Database)SEPT10
DoCM (Curated mutations)SEPT10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEPT10 (select a term)
intoGenSEPT10
Cancer3DSEPT10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611737   
Orphanet
MedgenSEPT10
Genetic Testing Registry SEPT10
NextProtQ9P0V9 [Medical]
TSGene151011
GENETestsSEPT10
Huge Navigator Sep-10 [HugePedia]
snp3D : Map Gene to Disease151011
BioCentury BCIQSEPT10
ClinGenSEPT10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151011
Chemical/Pharm GKB GenePA134918683
Clinical trialSEPT10
Miscellaneous
canSAR (ICR)SEPT10 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEPT10
EVEXSEPT10
GoPubMedSEPT10
iHOPSEPT10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:42 CET 2017

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