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SEPT11 (septin 11)

Identity

Alias_symbol (synonym)FLJ10849
Other alias-
HGNC (Hugo) SEPT11
LocusID (NCBI) 55752
Atlas_Id 172
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 76949714 and ends at 77038615 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PPP3CA 4q24 / SEPT11 4q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(X;11)(q24;q23) KMT2A/SEPT6


External links

Nomenclature
HGNC (Hugo)SEPT11   25589
Cards
Entrez_Gene (NCBI)SEPT11  55752  septin 11
Aliases
GeneCards (Weizmann)SEPT11
Ensembl hg19 (Hinxton)ENSG00000138758 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138758 [Gene_View]  chr4:76949714-77038615 [Contig_View]  SEPT11 [Vega]
ICGC DataPortalENSG00000138758
TCGA cBioPortalSEPT11
AceView (NCBI)SEPT11
Genatlas (Paris)SEPT11
WikiGenes55752
SOURCE (Princeton)SEPT11
Genetics Home Reference (NIH)SEPT11
Genomic and cartography
GoldenPath hg38 (UCSC)SEPT11  -     chr4:76949714-77038615 +  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEPT11  -     4q21.1   [Description]    (hg19-Feb_2009)
EnsemblSEPT11 - 4q21.1 [CytoView hg19]  SEPT11 - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBISEPT11 [Mapview hg19]  SEPT11 [Mapview hg38]
OMIM612887   
Gene and transcription
Genbank (Entrez)AI580485 AI741944 AK001711 AK027279 AK027633
RefSeq transcript (Entrez)NM_001306147 NM_018243
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEPT11
Cluster EST : UnigeneHs.128199 [ NCBI ]
CGAP (NCI)Hs.128199
Alternative Splicing GalleryENSG00000138758
Gene ExpressionSEPT11 [ NCBI-GEO ]   SEPT11 [ EBI - ARRAY_EXPRESS ]   SEPT11 [ SEEK ]   SEPT11 [ MEM ]
Gene Expression Viewer (FireBrowse)SEPT11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55752
GTEX Portal (Tissue expression)SEPT11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVA2
Splice isoforms : SwissVarQ9NVA2
PhosPhoSitePlusQ9NVA2
Domaine pattern : Prosite (Expaxy)G_SEPTIN (PS51719)   
Domains : Interpro (EBI)G_SEPTIN_dom    P-loop_NTPase    Septin   
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
Conserved Domain (NCBI)SEPT11
DMDM Disease mutations55752
Blocks (Seattle)SEPT11
SuperfamilyQ9NVA2
Human Protein AtlasENSG00000138758
Peptide AtlasQ9NVA2
HPRD08555
IPIIPI00952909   IPI00019376   IPI00967716   IPI00963822   IPI00964937   IPI00964658   IPI00964663   IPI00967443   IPI00965828   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVA2
IntAct (EBI)Q9NVA2
FunCoupENSG00000138758
BioGRIDSEPT11
STRING (EMBL)SEPT11
ZODIACSEPT11
Ontologies - Pathways
QuickGOQ9NVA2
Ontology : AmiGOstress fiber  protein binding  GTP binding  cytoplasm  cell cycle  cell junction  axon  dendritic spine  protein heterooligomerization  cell division  extracellular exosome  
Ontology : EGO-EBIstress fiber  protein binding  GTP binding  cytoplasm  cell cycle  cell junction  axon  dendritic spine  protein heterooligomerization  cell division  extracellular exosome  
Pathways : KEGGBacterial invasion of epithelial cells   
NDEx NetworkSEPT11
Atlas of Cancer Signalling NetworkSEPT11
Wikipedia pathwaysSEPT11
Orthology - Evolution
OrthoDB55752
GeneTree (enSembl)ENSG00000138758
Phylogenetic Trees/Animal Genes : TreeFamSEPT11
HOVERGENQ9NVA2
HOGENOMQ9NVA2
Homologs : HomoloGeneSEPT11
Homology/Alignments : Family Browser (UCSC)SEPT11
Gene fusions - Rearrangements
Fusion : MitelmanPPP3CA/SEPT11 [4q24/4q21.1]  [t(4;4)(q21;q24)]  
Fusion: TCGAPPP3CA 4q24 SEPT11 4q21.1 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEPT11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEPT11
dbVarSEPT11
ClinVarSEPT11
1000_GenomesSEPT11 
Exome Variant ServerSEPT11
ExAC (Exome Aggregation Consortium)SEPT11 (select the gene name)
Genetic variants : HAPMAP55752
Genomic Variants (DGV)SEPT11 [DGVbeta]
DECIPHERSEPT11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEPT11 
Mutations
ICGC Data PortalSEPT11 
TCGA Data PortalSEPT11 
Broad Tumor PortalSEPT11
OASIS PortalSEPT11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEPT11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEPT11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEPT11
DgiDB (Drug Gene Interaction Database)SEPT11
DoCM (Curated mutations)SEPT11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEPT11 (select a term)
intoGenSEPT11
Cancer3DSEPT11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612887   
Orphanet
MedgenSEPT11
Genetic Testing Registry SEPT11
NextProtQ9NVA2 [Medical]
TSGene55752
GENETestsSEPT11
Target ValidationSEPT11
Huge Navigator SEPT11 [HugePedia]
snp3D : Map Gene to Disease55752
BioCentury BCIQSEPT11
ClinGenSEPT11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55752
Chemical/Pharm GKB GenePA128394688
Clinical trialSEPT11
Miscellaneous
canSAR (ICR)SEPT11 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEPT11
EVEXSEPT11
GoPubMedSEPT11
iHOPSEPT11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:55 CEST 2017

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