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SEPT12 (septin 12)

Identity

Alias_symbol (synonym)FLJ25410
Other aliasSPGF10
HGNC (Hugo) SEPT12
LocusID (NCBI) 124404
Atlas_Id 53651
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4777614 and ends at 4788521 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEPT12   26348
Cards
Entrez_Gene (NCBI)SEPT12  124404  septin 12
AliasesSPGF10
GeneCards (Weizmann)SEPT12
Ensembl hg19 (Hinxton)ENSG00000140623 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140623 [Gene_View]  chr16:4777614-4788521 [Contig_View]  SEPT12 [Vega]
ICGC DataPortalENSG00000140623
TCGA cBioPortalSEPT12
AceView (NCBI)SEPT12
Genatlas (Paris)SEPT12
WikiGenes124404
SOURCE (Princeton)SEPT12
Genetics Home Reference (NIH)SEPT12
Genomic and cartography
GoldenPath hg38 (UCSC)SEPT12  -     chr16:4777614-4788521 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEPT12  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSEPT12 - 16p13.3 [CytoView hg19]  SEPT12 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISEPT12 [Mapview hg19]  SEPT12 [Mapview hg38]
OMIM611562   614822   
Gene and transcription
Genbank (Entrez)AI554914 AK058139 AK098718 BC024017 BC035619
RefSeq transcript (Entrez)NM_001154458 NM_144605
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEPT12
Cluster EST : UnigeneHs.126780 [ NCBI ]
CGAP (NCI)Hs.126780
Alternative Splicing GalleryENSG00000140623
Gene ExpressionSEPT12 [ NCBI-GEO ]   SEPT12 [ EBI - ARRAY_EXPRESS ]   SEPT12 [ SEEK ]   SEPT12 [ MEM ]
Gene Expression Viewer (FireBrowse)SEPT12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124404
GTEX Portal (Tissue expression)SEPT12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYM1
Splice isoforms : SwissVarQ8IYM1
PhosPhoSitePlusQ8IYM1
Domaine pattern : Prosite (Expaxy)G_SEPTIN (PS51719)   
Domains : Interpro (EBI)G_SEPTIN_dom    P-loop_NTPase    Septin   
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
Conserved Domain (NCBI)SEPT12
DMDM Disease mutations124404
Blocks (Seattle)SEPT12
SuperfamilyQ8IYM1
Human Protein AtlasENSG00000140623
Peptide AtlasQ8IYM1
HPRD08061
IPIIPI00293544   IPI00745407   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYM1
IntAct (EBI)Q8IYM1
FunCoupENSG00000140623
BioGRIDSEPT12
STRING (EMBL)SEPT12
ZODIACSEPT12
Ontologies - Pathways
QuickGOQ8IYM1
Ontology : AmiGOstress fiber  protein binding  GTP binding  GTP binding  nucleus  spindle  cell cycle  spermatogenesis  microtubule cytoskeleton  GDP binding  cell differentiation  midbody  septin complex  septin complex  cleavage furrow  phosphatidylinositol binding  identical protein binding  protein homodimerization activity  protein homodimerization activity  perinuclear region of cytoplasm  cell division  sperm annulus  sperm motility  
Ontology : EGO-EBIstress fiber  protein binding  GTP binding  GTP binding  nucleus  spindle  cell cycle  spermatogenesis  microtubule cytoskeleton  GDP binding  cell differentiation  midbody  septin complex  septin complex  cleavage furrow  phosphatidylinositol binding  identical protein binding  protein homodimerization activity  protein homodimerization activity  perinuclear region of cytoplasm  cell division  sperm annulus  sperm motility  
Pathways : KEGGBacterial invasion of epithelial cells   
NDEx NetworkSEPT12
Atlas of Cancer Signalling NetworkSEPT12
Wikipedia pathwaysSEPT12
Orthology - Evolution
OrthoDB124404
GeneTree (enSembl)ENSG00000140623
Phylogenetic Trees/Animal Genes : TreeFamSEPT12
HOVERGENQ8IYM1
HOGENOMQ8IYM1
Homologs : HomoloGeneSEPT12
Homology/Alignments : Family Browser (UCSC)SEPT12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEPT12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEPT12
dbVarSEPT12
ClinVarSEPT12
1000_GenomesSEPT12 
Exome Variant ServerSEPT12
ExAC (Exome Aggregation Consortium)SEPT12 (select the gene name)
Genetic variants : HAPMAP124404
Genomic Variants (DGV)SEPT12 [DGVbeta]
DECIPHERSEPT12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEPT12 
Mutations
ICGC Data PortalSEPT12 
TCGA Data PortalSEPT12 
Broad Tumor PortalSEPT12
OASIS PortalSEPT12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEPT12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEPT12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch SEPT12
DgiDB (Drug Gene Interaction Database)SEPT12
DoCM (Curated mutations)SEPT12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEPT12 (select a term)
intoGenSEPT12
Cancer3DSEPT12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611562    614822   
Orphanet20358   
MedgenSEPT12
Genetic Testing Registry SEPT12
NextProtQ8IYM1 [Medical]
TSGene124404
GENETestsSEPT12
Target ValidationSEPT12
Huge Navigator SEPT12 [HugePedia]
snp3D : Map Gene to Disease124404
BioCentury BCIQSEPT12
ClinGenSEPT12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124404
Chemical/Pharm GKB GenePA162402916
Clinical trialSEPT12
Miscellaneous
canSAR (ICR)SEPT12 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEPT12
EVEXSEPT12
GoPubMedSEPT12
iHOPSEPT12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:04 CEST 2017

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