Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEPT3 (septin 3)

Identity

Other namesSEP3
bK250D10.3
HGNC (Hugo) SEPT3
LocusID (NCBI) 55964
Location 22q13.2
Location_base_pair Starts at 42372931 and ends at 42394225 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEPT3   10750
Cards
Entrez_Gene (NCBI)SEPT3  55964  septin 3
GeneCards (Weizmann)SEPT3
Ensembl hg19 (Hinxton)ENSG00000100167 [Gene_View]  chr22:42372931-42394225 [Contig_View]  SEPT3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100167 [Gene_View]  chr22:42372931-42394225 [Contig_View]  SEPT3 [Vega]
ICGC DataPortalENSG00000100167
cBioPortalSEPT3
AceView (NCBI)SEPT3
Genatlas (Paris)SEPT3
WikiGenes55964
SOURCE (Princeton)SEPT3
Genomic and cartography
GoldenPath hg19 (UCSC)SEPT3  -     chr22:42372931-42394225 +  22q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEPT3  -     22q13.2   [Description]    (hg38-Dec_2013)
EnsemblSEPT3 - 22q13.2 [CytoView hg19]  SEPT3 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISEPT3 [Mapview hg19]  SEPT3 [Mapview hg38]
OMIM608314   
Gene and transcription
Genbank (Entrez)AB209152 AF285107 AF285108 AF285109 AI341333
RefSeq transcript (Entrez)NM_019106 NM_145733 NM_145734
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004929430
Consensus coding sequences : CCDS (NCBI)SEPT3
Cluster EST : UnigeneHs.120483 [ NCBI ]
CGAP (NCI)Hs.120483
Alternative Splicing : Fast-db (Paris)GSHG0020072
Alternative Splicing GalleryENSG00000100167
Gene ExpressionSEPT3 [ NCBI-GEO ]     SEPT3 [ SEEK ]   SEPT3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UH03 (Uniprot)
NextProtQ9UH03  [Medical]
With graphics : InterProQ9UH03
Splice isoforms : SwissVarQ9UH03 (Swissvar)
Domains : Interpro (EBI)Cell_div_GTP-bd    P-loop_NTPase    Septin    Septin3   
Related proteins : CluSTrQ9UH03
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
DMDM Disease mutations55964
Blocks (Seattle)Q9UH03
PDB (SRS)3SOP   
PDB (PDBSum)3SOP   
PDB (IMB)3SOP   
PDB (RSDB)3SOP   
Human Protein AtlasENSG00000100167
Peptide AtlasQ9UH03
HPRD10515
IPIIPI00384187   IPI00745056   IPI00022652   IPI01012112   IPI00873749   IPI00940800   
Protein Interaction databases
DIP (DOE-UCLA)Q9UH03
IntAct (EBI)Q9UH03
FunCoupENSG00000100167
BioGRIDSEPT3
IntegromeDBSEPT3
STRING (EMBL)SEPT3
Ontologies - Pathways
QuickGOQ9UH03
Ontology : AmiGOmolecular_function  GTP binding  cell cycle  cell junction  septin complex  synapse  cell division  
Ontology : EGO-EBImolecular_function  GTP binding  cell cycle  cell junction  septin complex  synapse  cell division  
Pathways : KEGGBacterial invasion of epithelial cells   
Protein Interaction DatabaseSEPT3
DoCM (Curated mutations)SEPT3
Wikipedia pathwaysSEPT3
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSEPT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEPT3
dbVarSEPT3
ClinVarSEPT3
1000_GenomesSEPT3 
Exome Variant ServerSEPT3
SNP (GeneSNP Utah)SEPT3
SNP : HGBaseSEPT3
Genetic variants : HAPMAPSEPT3
Genomic VariantsSEPT3  SEPT3 [DGVbeta]
Mutations
ICGC Data PortalENSG00000100167 
Somatic Mutations in Cancer : COSMICSEPT3 
CONAN: Copy Number AnalysisSEPT3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)22:42372931-42394225
Mutations and Diseases : HGMDSEPT3
OMIM608314   
MedgenSEPT3
NextProtQ9UH03 [Medical]
GENETestsSEPT3
Disease Genetic AssociationSEPT3
Huge Navigator SEPT3 [HugePedia]  SEPT3 [HugeCancerGEM]
snp3D : Map Gene to Disease55964
DGIdb (Drug Gene Interaction db)SEPT3
General knowledge
Homologs : HomoloGeneSEPT3
Homology/Alignments : Family Browser (UCSC)SEPT3
Phylogenetic Trees/Animal Genes : TreeFamSEPT3
Chemical/Protein Interactions : CTD55964
Chemical/Pharm GKB GenePA24355
Clinical trialSEPT3
Cancer Resource (Charite)ENSG00000100167
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMineSEPT3
GoPubMedSEPT3
iHOPSEPT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:21:53 CET 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.