Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEPT3 (septin 3)

Identity

Other namesSEP3
bK250D10.3
HGNC (Hugo) SEPT3
LocusID (NCBI) 55964
Location 22q13.2
Location_base_pair Starts at 42372931 and ends at 42394225 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEPT3   10750
Cards
Entrez_Gene (NCBI)SEPT3  55964  septin 3
GeneCards (Weizmann)SEPT3
Ensembl (Hinxton)ENSG00000100167 [Gene_View]  chr22:42372931-42394225 [Contig_View]  SEPT3 [Vega]
AceView (NCBI)SEPT3
Genatlas (Paris)SEPT3
WikiGenes55964
SOURCE (Princeton)NM_019106 NM_145733 NM_145734
Genomic and cartography
GoldenPath (UCSC)SEPT3  -  22q13.2   chr22:42372931-42394225 +  22q13.2   [Description]    (hg19-Feb_2009)
EnsemblSEPT3 - 22q13.2 [CytoView]
Mapping of homologs : NCBISEPT3 [Mapview]
OMIM608314   
Gene and transcription
Genbank (Entrez)AB209152 AF285107 AF285108 AF285109 AI341333
RefSeq transcript (Entrez)NM_019106 NM_145733 NM_145734
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004929430
Consensus coding sequences : CCDS (NCBI)SEPT3
Cluster EST : UnigeneHs.120483 [ NCBI ]
CGAP (NCI)Hs.120483
Alternative Splicing : Fast-db (Paris)GSHG0020072
Alternative Splicing GalleryENSG00000100167
Gene ExpressionSEPT3 [ NCBI-GEO ]     SEPT3 [ SEEK ]   SEPT3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UH03 (Uniprot)
NextProtQ9UH03  [Medical]
With graphics : InterProQ9UH03
Splice isoforms : SwissVarQ9UH03 (Swissvar)
Domains : Interpro (EBI)Cell_div_GTP-bd    P-loop_NTPase    Septin    Septin3   
Related proteins : CluSTrQ9UH03
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
DMDM Disease mutations55964
Blocks (Seattle)Q9UH03
PDB (SRS)3SOP   
PDB (PDBSum)3SOP   
PDB (IMB)3SOP   
PDB (RSDB)3SOP   
Human Protein AtlasENSG00000100167
Peptide AtlasQ9UH03
HPRD10515
IPIIPI00384187   IPI00745056   IPI00022652   IPI01012112   IPI00873749   IPI00940800   
Protein Interaction databases
DIP (DOE-UCLA)Q9UH03
IntAct (EBI)Q9UH03
FunCoupENSG00000100167
BioGRIDSEPT3
InParanoidQ9UH03
Interologous Interaction database Q9UH03
IntegromeDBSEPT3
STRING (EMBL)SEPT3
Ontologies - Pathways
Ontology : AmiGOcytokinesis  molecular_function  GTP binding  cell junction  septin complex  synapse  
Ontology : EGO-EBIcytokinesis  molecular_function  GTP binding  cell junction  septin complex  synapse  
Pathways : KEGGBacterial invasion of epithelial cells   
REACTOMESEPT3
Protein Interaction DatabaseSEPT3
Wikipedia pathwaysSEPT3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SEPT3
SNP (GeneSNP Utah)SEPT3
SNP : HGBaseSEPT3
Genetic variants : HAPMAPSEPT3
1000_GenomesSEPT3 
ICGC programENSG00000100167 
Somatic Mutations in Cancer : COSMICSEPT3 
CONAN: Copy Number AnalysisSEPT3 
Mutations and Diseases : HGMDSEPT3
OMIM608314   
GENETestsSEPT3
Disease Genetic AssociationSEPT3
Huge Navigator SEPT3 [HugePedia]  SEPT3 [HugeCancerGEM]
Genomic VariantsSEPT3  SEPT3 [DGVbeta]
Exome VariantSEPT3
dbVarSEPT3
ClinVarSEPT3
snp3D : Map Gene to Disease55964
General knowledge
Homologs : HomoloGeneSEPT3
Homology/Alignments : Family Browser (UCSC)SEPT3
Phylogenetic Trees/Animal Genes : TreeFamSEPT3
Chemical/Protein Interactions : CTD55964
Chemical/Pharm GKB GenePA24355
Clinical trialSEPT3
Cancer Resource (Charite)ENSG00000100167
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMineSEPT3
iHOPSEPT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:10:08 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.