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SEPT3 (septin 3)

Identity

Other namesSEP3
bK250D10.3
HGNC (Hugo) sept-03
LocusID (NCBI) 55964
Atlas_Id 42262
Location 22q13.2
Location_base_pair Starts at 42372931 and ends at 42394225 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)sept-03   10750
Cards
Entrez_Gene (NCBI)SEPT3  55964  septin 3
GeneCards (Weizmann)SEPT3
Ensembl hg19 (Hinxton)ENSG00000100167 [Gene_View]  chr22:42372931-42394225 [Contig_View]  SEPT3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100167 [Gene_View]  chr22:42372931-42394225 [Contig_View]  SEPT3 [Vega]
ICGC DataPortalENSG00000100167
TCGA cBioPortalSEPT3
AceView (NCBI)SEPT3
Genatlas (Paris)SEPT3
WikiGenes55964
SOURCE (Princeton)SEPT3
Genomic and cartography
GoldenPath hg19 (UCSC)SEPT3  -     chr22:42372931-42394225 +  22q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEPT3  -     22q13.2   [Description]    (hg38-Dec_2013)
EnsemblSEPT3 - 22q13.2 [CytoView hg19]  SEPT3 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISEPT3 [Mapview hg19]  SEPT3 [Mapview hg38]
OMIM608314   
Gene and transcription
Genbank (Entrez)AB209152 AF285107 AF285108 AF285109 AI341333
RefSeq transcript (Entrez)NM_019106 NM_145733 NM_145734
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)SEPT3
Cluster EST : UnigeneHs.120483 [ NCBI ]
CGAP (NCI)Hs.120483
Alternative Splicing : Fast-db (Paris)GSHG0020072
Alternative Splicing GalleryENSG00000100167
Gene ExpressionSEPT3 [ NCBI-GEO ]     SEPT3 [ SEEK ]   SEPT3 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55964
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UH03 (Uniprot)
NextProtQ9UH03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UH03
Splice isoforms : SwissVarQ9UH03 (Swissvar)
PhosPhoSitePlusQ9UH03
Domaine pattern : Prosite (Expaxy)G_SEPTIN (PS51719)   
Domains : Interpro (EBI)G_SEPTIN_dom    P-loop_NTPase    Septin    Septin3   
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
DMDM Disease mutations55964
Blocks (Seattle)SEPT3
PDB (SRS)3SOP   
PDB (PDBSum)3SOP   
PDB (IMB)3SOP   
PDB (RSDB)3SOP   
Structural Biology KnowledgeBase3SOP   
SCOP (Structural Classification of Proteins)3SOP   
CATH (Classification of proteins structures)3SOP   
Human Protein AtlasENSG00000100167
Peptide AtlasQ9UH03
HPRD10515
IPIIPI00384187   IPI00745056   IPI00022652   IPI01012112   IPI00873749   IPI00940800   
Protein Interaction databases
DIP (DOE-UCLA)Q9UH03
IntAct (EBI)Q9UH03
FunCoupENSG00000100167
BioGRIDSEPT3
IntegromeDBSEPT3
STRING (EMBL)SEPT3
ZODIACSEPT3
Ontologies - Pathways
QuickGOQ9UH03
Ontology : AmiGOmolecular_function  protein binding  GTP binding  cytoplasm  cytoskeleton  cell cycle  cell junction  synapse  cell division  
Ontology : EGO-EBImolecular_function  protein binding  GTP binding  cytoplasm  cytoskeleton  cell cycle  cell junction  synapse  cell division  
Pathways : KEGGBacterial invasion of epithelial cells   
Protein Interaction DatabaseSEPT3
Atlas of Cancer Signalling NetworkSEPT3
Wikipedia pathwaysSEPT3
Orthology - Evolution
OrthoDB55964
GeneTree (enSembl)ENSG00000100167
Phylogenetic Trees/Animal Genes : TreeFamsept-03
Homologs : HomoloGeneSEPT3
Homology/Alignments : Family Browser (UCSC)SEPT3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSEPT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEPT3
dbVarSEPT3
ClinVarSEPT3
1000_GenomesSEPT3 
Exome Variant ServerSEPT3
Exome Aggregation Consortium (ExAC)ENSG00000100167
SNP (GeneSNP Utah)SEPT3
SNP : HGBaseSEPT3
Genetic variants : HAPMAPSEPT3
Genomic Variants (DGV)SEPT3 [DGVbeta]
Mutations
ICGC Data Portalsept-03 
TCGA Data Portalsept-03 
Tumor Portalsept-03
TCGA Copy Number Portalsept-03
Somatic Mutations in Cancer : COSMICSEPT3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEPT3
DgiDB (Drug Gene Interaction Database)SEPT3
DoCM (Curated mutations)SEPT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEPT3 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)22:42372931-42394225
CONAN: Copy Number AnalysisSEPT3 
Mutations and Diseases : HGMDsept-03
OMIM608314   
MedgenSEPT3
NextProtQ9UH03 [Medical]
TSGene55964
GENETestsSEPT3
Huge Navigator sept-03 [HugePedia]  sept-03 [HugeCancerGEM]
snp3D : Map Gene to Disease55964
BioCentury BCIQSEPT3
General knowledge
Chemical/Protein Interactions : CTD55964
Chemical/Pharm GKB GenePA24355
Clinical trialSEPT3
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEPT3
GoPubMedSEPT3
iHOPSEPT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:28:03 CET 2016

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