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SEPT3 (septin 3)

Identity

Alias_namesSEP3
Other aliasbK250D10.3
HGNC (Hugo) 3-Sep
LocusID (NCBI) 55964
Atlas_Id 42262
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41976927 and ends at 41998221 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)3-Sep   10750
Cards
Entrez_Gene (NCBI)SEPT3  55964  septin 3
AliasesSEP3; bK250D10.3
GeneCards (Weizmann)SEPT3
Ensembl hg19 (Hinxton)ENSG00000100167 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100167 [Gene_View]  chr22:41976927-41998221 [Contig_View]  SEPT3 [Vega]
ICGC DataPortalENSG00000100167
TCGA cBioPortalSEPT3
AceView (NCBI)SEPT3
Genatlas (Paris)SEPT3
WikiGenes55964
SOURCE (Princeton)SEPT3
Genetics Home Reference (NIH)SEPT3
Genomic and cartography
GoldenPath hg38 (UCSC)SEPT3  -     chr22:41976927-41998221 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEPT3  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblSEPT3 - 22q13.2 [CytoView hg19]  SEPT3 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISEPT3 [Mapview hg19]  SEPT3 [Mapview hg38]
OMIM608314   
Gene and transcription
Genbank (Entrez)AB209152 AF285107 AF285108 AF285109 AI341333
RefSeq transcript (Entrez)NM_019106 NM_145733 NM_145734
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEPT3
Cluster EST : UnigeneHs.120483 [ NCBI ]
CGAP (NCI)Hs.120483
Alternative Splicing GalleryENSG00000100167
Gene ExpressionSEPT3 [ NCBI-GEO ]   SEPT3 [ EBI - ARRAY_EXPRESS ]   SEPT3 [ SEEK ]   SEPT3 [ MEM ]
Gene Expression Viewer (FireBrowse)SEPT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55964
GTEX Portal (Tissue expression)SEPT3
Human Protein AtlasENSG00000100167-SEPT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UH03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UH03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UH03
Splice isoforms : SwissVarQ9UH03
PhosPhoSitePlusQ9UH03
Domaine pattern : Prosite (Expaxy)G_SEPTIN (PS51719)   
Domains : Interpro (EBI)G_SEPTIN_dom    P-loop_NTPase    Septin    Septin3   
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
Conserved Domain (NCBI)SEPT3
DMDM Disease mutations55964
Blocks (Seattle)SEPT3
PDB (SRS)3SOP    4Z51    4Z54   
PDB (PDBSum)3SOP    4Z51    4Z54   
PDB (IMB)3SOP    4Z51    4Z54   
PDB (RSDB)3SOP    4Z51    4Z54   
Structural Biology KnowledgeBase3SOP    4Z51    4Z54   
SCOP (Structural Classification of Proteins)3SOP    4Z51    4Z54   
CATH (Classification of proteins structures)3SOP    4Z51    4Z54   
SuperfamilyQ9UH03
Human Protein Atlas [tissue]ENSG00000100167-SEPT3 [tissue]
Peptide AtlasQ9UH03
HPRD10515
IPIIPI00384187   IPI00745056   IPI00022652   IPI01012112   IPI00873749   IPI00940800   
Protein Interaction databases
DIP (DOE-UCLA)Q9UH03
IntAct (EBI)Q9UH03
FunCoupENSG00000100167
BioGRIDSEPT3
STRING (EMBL)SEPT3
ZODIACSEPT3
Ontologies - Pathways
QuickGOQ9UH03
Ontology : AmiGOmolecular_function  protein binding  GTP binding  cytoplasm  cytoskeleton  cell cycle  cell junction  identical protein binding  synapse  cell division  
Ontology : EGO-EBImolecular_function  protein binding  GTP binding  cytoplasm  cytoskeleton  cell cycle  cell junction  identical protein binding  synapse  cell division  
NDEx NetworkSEPT3
Atlas of Cancer Signalling NetworkSEPT3
Wikipedia pathwaysSEPT3
Orthology - Evolution
OrthoDB55964
GeneTree (enSembl)ENSG00000100167
Phylogenetic Trees/Animal Genes : TreeFam3-Sep
HOVERGENQ9UH03
HOGENOMQ9UH03
Homologs : HomoloGeneSEPT3
Homology/Alignments : Family Browser (UCSC)SEPT3
Gene fusions - Rearrangements
Fusion : QuiverSEPT3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEPT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEPT3
dbVarSEPT3
ClinVarSEPT3
1000_GenomesSEPT3 
Exome Variant ServerSEPT3
ExAC (Exome Aggregation Consortium)ENSG00000100167
GNOMAD BrowserENSG00000100167
Genetic variants : HAPMAP55964
Genomic Variants (DGV)SEPT3 [DGVbeta]
DECIPHERSEPT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEPT3 
Mutations
ICGC Data Portal3-Sep 
TCGA Data Portal3-Sep 
Broad Tumor Portal3-Sep
OASIS Portal3-Sep [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEPT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD3-Sep
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEPT3
DgiDB (Drug Gene Interaction Database)SEPT3
DoCM (Curated mutations)SEPT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEPT3 (select a term)
intoGenSEPT3
Cancer3DSEPT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608314   
Orphanet
DisGeNETSEPT3
MedgenSEPT3
Genetic Testing Registry SEPT3
NextProtQ9UH03 [Medical]
TSGene55964
GENETestsSEPT3
Target ValidationSEPT3
Huge Navigator 3-Sep [HugePedia]
snp3D : Map Gene to Disease55964
BioCentury BCIQSEPT3
ClinGenSEPT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55964
Chemical/Pharm GKB GenePA24355
Clinical trialSEPT3
Miscellaneous
canSAR (ICR)SEPT3 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEPT3
EVEXSEPT3
GoPubMedSEPT3
iHOPSEPT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 28 13:36:45 CET 2018

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