Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SEPT3 (septin 3)

Identity

Other namesSEP3
bK250D10.3
HGNC (Hugo) SEPT3
LocusID (NCBI) 55964
Location 22q13.2
Location_base_pair Starts at 42372931 and ends at 42394225 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEPT3   10750
Entrez_Gene (NCBI)SEPT3  55964  septin 3
Cards
GeneCards (Weizmann)SEPT3
Ensembl (Hinxton)ENSG00000100167 [Gene_View]  chr22:42372931-42394225 [Contig_View]  SEPT3 [Vega]
AceView (NCBI)SEPT3
Genatlas (Paris)SEPT3
SOURCE (Stanford)NM_019106 NM_145733 NM_145734
Genomic and cartography
GoldenPath (UCSC)SEPT3  -  22q13.2   chr22:42372931-42394225 +  22q13.2   [Description]    (hg19-Feb_2009)
EnsemblSEPT3 - 22q13.2 [CytoView]
Mapping of homologs : NCBISEPT3 [Mapview]
OMIM608314   
Gene and transcription
Genbank (Entrez)AB209152 AF285107 AF285108 AF285109 AI341333
RefSeq transcript (SRS)NM_019106 NM_145733 NM_145734
RefSeq transcript (Entrez)NM_019106 NM_145733 NM_145734
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
Consensus coding sequences : CCDS (NCBI)SEPT3
Cluster EST : UnigeneHs.120483 [ SRS ] Hs.120483 [ NCBI ]
CGAP (NCI)Hs.120483
Alternative Splicing : Fast-db (Paris)GSHG0020072
Alternative Splicing GalleryENSG00000100167
Gene ExpressionSEPT3 [ NCBI-GEO ]   SEPT3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UH03 (SRS) Q9UH03 (Uniprot)
NextProtQ9UH03
With graphics : InterProQ9UH03
Splice isoforms : SwissVarQ9UH03(Swissvar)
Domains : Interpro (SRS)Cell_div_GTP-bd    Septin    Septin3   
Domains : Interpro (EBI)Cell_div_GTP-bd    Septin    Septin3   
Related proteins : CluSTrQ9UH03
Domain families : Pfam (SRS)Septin (PF00735)   
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
DMDM55964
Blocks (Seattle)Q9UH03
Human Protein AtlasENSG00000100167
HPRD10515
IPIIPI00384187   IPI00745056   IPI00022652   IPI01012112   IPI00873749   IPI00940800   
Protein Interaction databases
DIP (DOE-UCLA)Q9UH03
IntAct (EBI)Q9UH03
FunCoupENSG00000100167
REACTOMESEPT3
Protein Interaction Database55964
BioGRIDSEPT3
InParanoidQ9UH03
Interologous Interaction database Q9UH03
IntegromeDBSEPT3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SEPT3
SNP (GeneSNP Utah)SEPT3
SNP : HGBaseSEPT3
Genetic variants : HAPMAPSEPT3
Somatic Mutations in Cancer : COSMICSEPT3 
CONAN: Copy Number AnalysisSEPT3 
Mutations and Diseases : HGMDSEPT3
OMIM608314   
GENETests608314   
Disease Genetic AssociationSEPT3
Huge Navigator SEPT3 [HugePedia]  SEPT3 [HugeCancerGEM]
Genomic VariantsSEPT3  SEPT3 [DGVbeta]
snp3D : Map Gene to Disease55964
General knowledge
Homologs : HomoloGeneSEPT3
Homology/Alignments : Family Browser (UCSC)SEPT3
Phylogenetic Trees/Animal Genes : TreeFamSEPT3
Chemical/Protein Interactions : CTD55964
Chemical/Pharm GKB GenePA24355
Clinical trialSEPT3
Cancer Resource (Charite)ENSG00000100167
Ontology : AmiGOcytokinesis  molecular_function  GTP binding  cytosol  cell cycle  cell junction  septin complex  presynaptic membrane  
Ontology : EGO-EBIcytokinesis  molecular_function  GTP binding  cytosol  cell cycle  cell junction  septin complex  presynaptic membrane  
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGeneSEPT3
iHOPSEPT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:45:14 CEST 2013
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