Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEPT5-GP1BB (SEPT5-GP1BB readthrough)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100526833
Atlas_Id 73125
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 19717220 and ends at 19724774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SEPT5-GP1BB  100526833  SEPT5-GP1BB readthrough
Aliases
GeneCards (Weizmann)SEPT5-GP1BB
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:19717220-19724774 [Contig_View]  SEPT5-GP1BB [Vega]
TCGA cBioPortalSEPT5-GP1BB
AceView (NCBI)SEPT5-GP1BB
Genatlas (Paris)SEPT5-GP1BB
WikiGenes100526833
SOURCE (Princeton)SEPT5-GP1BB
Genetics Home Reference (NIH)SEPT5-GP1BB
Genomic and cartography
GoldenPath hg38 (UCSC)SEPT5-GP1BB  -     chr22:19717220-19724774 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEPT5-GP1BB  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblSEPT5-GP1BB - 22q11.21 [CytoView hg19]  SEPT5-GP1BB - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBISEPT5-GP1BB [Mapview hg19]  SEPT5-GP1BB [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209168 BC020397 BC024304 BC030503 L20860
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEPT5-GP1BB
Cluster EST : UnigeneHs.728762 [ NCBI ]
CGAP (NCI)Hs.728762
Gene ExpressionSEPT5-GP1BB [ NCBI-GEO ]   SEPT5-GP1BB [ EBI - ARRAY_EXPRESS ]   SEPT5-GP1BB [ SEEK ]   SEPT5-GP1BB [ MEM ]
Gene Expression Viewer (FireBrowse)SEPT5-GP1BB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100526833
GTEX Portal (Tissue expression)SEPT5-GP1BB
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SEPT5-GP1BB
DMDM Disease mutations100526833
Blocks (Seattle)SEPT5-GP1BB
Protein Interaction databases
BioGRIDSEPT5-GP1BB
STRING (EMBL)SEPT5-GP1BB
ZODIACSEPT5-GP1BB
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100526833
BioCentury BCIQSEPT5-GP1BB
ClinGenSEPT5-GP1BB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100526833
Clinical trialSEPT5-GP1BB
Miscellaneous
canSAR (ICR)SEPT5-GP1BB (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEPT5-GP1BB
EVEXSEPT5-GP1BB
GoPubMedSEPT5-GP1BB
iHOPSEPT5-GP1BB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:58:51 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.