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SEPT8 (septin 8)

Identity

Alias_symbol (synonym)KIAA0202
SEP2
Other alias
HGNC (Hugo) SEPT8
LocusID (NCBI) 23176
Atlas_Id 46482
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 132750817 and ends at 132777375 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SEPT8 5q31.1 / AFF4 5q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEPT8   16511
Cards
Entrez_Gene (NCBI)SEPT8  23176  septin 8
AliasesSEP2
GeneCards (Weizmann)SEPT8
Ensembl hg19 (Hinxton)ENSG00000164402 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164402 [Gene_View]  chr5:132750817-132777375 [Contig_View]  SEPT8 [Vega]
ICGC DataPortalENSG00000164402
TCGA cBioPortalSEPT8
AceView (NCBI)SEPT8
Genatlas (Paris)SEPT8
WikiGenes23176
SOURCE (Princeton)SEPT8
Genetics Home Reference (NIH)SEPT8
Genomic and cartography
GoldenPath hg38 (UCSC)SEPT8  -     chr5:132750817-132777375 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEPT8  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblSEPT8 - 5q31.1 [CytoView hg19]  SEPT8 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBISEPT8 [Mapview hg19]  SEPT8 [Mapview hg38]
OMIM608418   
Gene and transcription
Genbank (Entrez)AF179995 AF440761 AF440762 AF440763 AI087126
RefSeq transcript (Entrez)NM_001098811 NM_001098812 NM_001098813 NM_001300798 NM_001300799 NM_015146
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEPT8
Cluster EST : UnigeneHs.522057 [ NCBI ]
CGAP (NCI)Hs.522057
Alternative Splicing GalleryENSG00000164402
Gene ExpressionSEPT8 [ NCBI-GEO ]   SEPT8 [ EBI - ARRAY_EXPRESS ]   SEPT8 [ SEEK ]   SEPT8 [ MEM ]
Gene Expression Viewer (FireBrowse)SEPT8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23176
GTEX Portal (Tissue expression)SEPT8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92599   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92599  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92599
Splice isoforms : SwissVarQ92599
PhosPhoSitePlusQ92599
Domaine pattern : Prosite (Expaxy)G_SEPTIN (PS51719)   
Domains : Interpro (EBI)G_SEPTIN_dom    P-loop_NTPase    SEPT8    Septin   
Domain families : Pfam (Sanger)Septin (PF00735)   
Domain families : Pfam (NCBI)pfam00735   
Conserved Domain (NCBI)SEPT8
DMDM Disease mutations23176
Blocks (Seattle)SEPT8
SuperfamilyQ92599
Human Protein AtlasENSG00000164402
Peptide AtlasQ92599
IPIIPI00549434   IPI00022082   IPI00787280   IPI00479741   IPI00658113   IPI00658216   IPI00658185   IPI00927728   IPI00925967   IPI00925741   
Protein Interaction databases
DIP (DOE-UCLA)Q92599
IntAct (EBI)Q92599
FunCoupENSG00000164402
BioGRIDSEPT8
STRING (EMBL)SEPT8
ZODIACSEPT8
Ontologies - Pathways
QuickGOQ92599
Ontology : AmiGOprotein binding  GTP binding  cytoplasm  cytoskeleton  myelin sheath  
Ontology : EGO-EBIprotein binding  GTP binding  cytoplasm  cytoskeleton  myelin sheath  
Pathways : KEGGBacterial invasion of epithelial cells   
NDEx NetworkSEPT8
Atlas of Cancer Signalling NetworkSEPT8
Wikipedia pathwaysSEPT8
Orthology - Evolution
OrthoDB23176
GeneTree (enSembl)ENSG00000164402
Phylogenetic Trees/Animal Genes : TreeFamSEPT8
HOVERGENQ92599
HOGENOMQ92599
Homologs : HomoloGeneSEPT8
Homology/Alignments : Family Browser (UCSC)SEPT8
Gene fusions - Rearrangements
Fusion : MitelmanSEPT8/AFF4 [5q31.1/5q31.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEPT8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEPT8
dbVarSEPT8
ClinVarSEPT8
1000_GenomesSEPT8 
Exome Variant ServerSEPT8
ExAC (Exome Aggregation Consortium)SEPT8 (select the gene name)
Genetic variants : HAPMAP23176
Genomic Variants (DGV)SEPT8 [DGVbeta]
DECIPHERSEPT8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEPT8 
Mutations
ICGC Data PortalSEPT8 
TCGA Data PortalSEPT8 
Broad Tumor PortalSEPT8
OASIS PortalSEPT8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEPT8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEPT8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEPT8
DgiDB (Drug Gene Interaction Database)SEPT8
DoCM (Curated mutations)SEPT8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEPT8 (select a term)
intoGenSEPT8
Cancer3DSEPT8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608418   
Orphanet
MedgenSEPT8
Genetic Testing Registry SEPT8
NextProtQ92599 [Medical]
TSGene23176
GENETestsSEPT8
Target ValidationSEPT8
Huge Navigator SEPT8 [HugePedia]
snp3D : Map Gene to Disease23176
BioCentury BCIQSEPT8
ClinGenSEPT8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23176
Chemical/Pharm GKB GenePA134879270
Clinical trialSEPT8
Miscellaneous
canSAR (ICR)SEPT8 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEPT8
EVEXSEPT8
GoPubMedSEPT8
iHOPSEPT8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:04 CEST 2017

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