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SERAC1 (serine active site containing 1)

Identity

Alias_symbol (synonym)FLJ14917
Other alias-
HGNC (Hugo) SERAC1
LocusID (NCBI) 84947
Atlas_Id 73130
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 158109504 and ends at 158168280 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FUBP3 (9q34.11) / SERAC1 (6q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERAC1   21061
Cards
Entrez_Gene (NCBI)SERAC1  84947  serine active site containing 1
Aliases
GeneCards (Weizmann)SERAC1
Ensembl hg19 (Hinxton)ENSG00000122335 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122335 [Gene_View]  ENSG00000122335 [Sequence]  chr6:158109504-158168280 [Contig_View]  SERAC1 [Vega]
ICGC DataPortalENSG00000122335
TCGA cBioPortalSERAC1
AceView (NCBI)SERAC1
Genatlas (Paris)SERAC1
WikiGenes84947
SOURCE (Princeton)SERAC1
Genetics Home Reference (NIH)SERAC1
Genomic and cartography
GoldenPath hg38 (UCSC)SERAC1  -     chr6:158109504-158168280 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERAC1  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblSERAC1 - 6q25.3 [CytoView hg19]  SERAC1 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBISERAC1 [Mapview hg19]  SERAC1 [Mapview hg38]
OMIM614725   614739   
Gene and transcription
Genbank (Entrez)AA128978 AK023656 AK027823 AK125878 BC001705
RefSeq transcript (Entrez)NM_032861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERAC1
Cluster EST : UnigeneHs.154706 [ NCBI ]
CGAP (NCI)Hs.154706
Alternative Splicing GalleryENSG00000122335
Gene ExpressionSERAC1 [ NCBI-GEO ]   SERAC1 [ EBI - ARRAY_EXPRESS ]   SERAC1 [ SEEK ]   SERAC1 [ MEM ]
Gene Expression Viewer (FireBrowse)SERAC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84947
GTEX Portal (Tissue expression)SERAC1
Human Protein AtlasENSG00000122335-SERAC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JX3
Splice isoforms : SwissVarQ96JX3
PhosPhoSitePlusQ96JX3
Domains : Interpro (EBI)AB_hydrolase    ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SERAC1
DMDM Disease mutations84947
Blocks (Seattle)SERAC1
SuperfamilyQ96JX3
Human Protein Atlas [tissue]ENSG00000122335-SERAC1 [tissue]
Peptide AtlasQ96JX3
HPRD10223
IPIIPI00014444   IPI00643398   IPI00827783   IPI00552048   
Protein Interaction databases
DIP (DOE-UCLA)Q96JX3
IntAct (EBI)Q96JX3
FunCoupENSG00000122335
BioGRIDSERAC1
STRING (EMBL)SERAC1
ZODIACSERAC1
Ontologies - Pathways
QuickGOQ96JX3
Ontology : AmiGOproteinaceous extracellular matrix  mitochondrion  endoplasmic reticulum  phospholipid biosynthetic process  integral component of membrane  extracellular matrix organization  
Ontology : EGO-EBIproteinaceous extracellular matrix  mitochondrion  endoplasmic reticulum  phospholipid biosynthetic process  integral component of membrane  extracellular matrix organization  
NDEx NetworkSERAC1
Atlas of Cancer Signalling NetworkSERAC1
Wikipedia pathwaysSERAC1
Orthology - Evolution
OrthoDB84947
GeneTree (enSembl)ENSG00000122335
Phylogenetic Trees/Animal Genes : TreeFamSERAC1
HOVERGENQ96JX3
HOGENOMQ96JX3
Homologs : HomoloGeneSERAC1
Homology/Alignments : Family Browser (UCSC)SERAC1
Gene fusions - Rearrangements
Fusion : QuiverSERAC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERAC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERAC1
dbVarSERAC1
ClinVarSERAC1
1000_GenomesSERAC1 
Exome Variant ServerSERAC1
ExAC (Exome Aggregation Consortium)ENSG00000122335
GNOMAD BrowserENSG00000122335
Varsome BrowserSERAC1
Genetic variants : HAPMAP84947
Genomic Variants (DGV)SERAC1 [DGVbeta]
DECIPHERSERAC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERAC1 
Mutations
ICGC Data PortalSERAC1 
TCGA Data PortalSERAC1 
Broad Tumor PortalSERAC1
OASIS PortalSERAC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERAC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERAC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SERAC1
DgiDB (Drug Gene Interaction Database)SERAC1
DoCM (Curated mutations)SERAC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERAC1 (select a term)
intoGenSERAC1
Cancer3DSERAC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614725    614739   
Orphanet22056   
DisGeNETSERAC1
MedgenSERAC1
Genetic Testing Registry SERAC1
NextProtQ96JX3 [Medical]
TSGene84947
GENETestsSERAC1
Target ValidationSERAC1
Huge Navigator SERAC1 [HugePedia]
snp3D : Map Gene to Disease84947
BioCentury BCIQSERAC1
ClinGenSERAC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84947
Chemical/Pharm GKB GenePA134951844
Clinical trialSERAC1
Miscellaneous
canSAR (ICR)SERAC1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERAC1
EVEXSERAC1
GoPubMedSERAC1
iHOPSERAC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:28:36 CEST 2018

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