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SERBP1 (SERPINE1 mRNA binding protein 1)

Identity

Alias_symbol (synonym)PAI-RBP1
DKFZP564M2423
CGI-55
HABP4L
PAIRBP1
CHD3IP
Other alias
HGNC (Hugo) SERBP1
LocusID (NCBI) 26135
Atlas_Id 45522
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 67407810 and ends at 67430440 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SERBP1 (1p31.3) / SPARC (5q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERBP1   17860
Cards
Entrez_Gene (NCBI)SERBP1  26135  SERPINE1 mRNA binding protein 1
AliasesCGI-55; CHD3IP; HABP4L; PAI-RBP1; 
PAIRBP1
GeneCards (Weizmann)SERBP1
Ensembl hg19 (Hinxton)ENSG00000142864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142864 [Gene_View]  chr1:67407810-67430440 [Contig_View]  SERBP1 [Vega]
ICGC DataPortalENSG00000142864
TCGA cBioPortalSERBP1
AceView (NCBI)SERBP1
Genatlas (Paris)SERBP1
WikiGenes26135
SOURCE (Princeton)SERBP1
Genetics Home Reference (NIH)SERBP1
Genomic and cartography
GoldenPath hg38 (UCSC)SERBP1  -     chr1:67407810-67430440 -  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERBP1  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblSERBP1 - 1p31.3 [CytoView hg19]  SERBP1 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBISERBP1 [Mapview hg19]  SERBP1 [Mapview hg38]
OMIM607378   
Gene and transcription
Genbank (Entrez)AF131807 AF151813 AK074970 AK095960 AK130606
RefSeq transcript (Entrez)NM_001018067 NM_001018068 NM_001018069 NM_015640
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERBP1
Cluster EST : UnigeneHs.530412 [ NCBI ]
CGAP (NCI)Hs.530412
Alternative Splicing GalleryENSG00000142864
Gene ExpressionSERBP1 [ NCBI-GEO ]   SERBP1 [ EBI - ARRAY_EXPRESS ]   SERBP1 [ SEEK ]   SERBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SERBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26135
GTEX Portal (Tissue expression)SERBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC51
Splice isoforms : SwissVarQ8NC51
PhosPhoSitePlusQ8NC51
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    IHABP4_N    SERBP1   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    IHABP4_N (PF16174)   
Domain families : Pfam (NCBI)pfam04774    pfam16174   
Domain families : Smart (EMBL)HABP4_PAI-RBP1 (SM01233)  
Conserved Domain (NCBI)SERBP1
DMDM Disease mutations26135
Blocks (Seattle)SERBP1
PDB (SRS)4V6X   
PDB (PDBSum)4V6X   
PDB (IMB)4V6X   
PDB (RSDB)4V6X   
Structural Biology KnowledgeBase4V6X   
SCOP (Structural Classification of Proteins)4V6X   
CATH (Classification of proteins structures)4V6X   
SuperfamilyQ8NC51
Human Protein AtlasENSG00000142864
Peptide AtlasQ8NC51
IPIIPI00470497   IPI00470498   IPI00412714   IPI00410693   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC51
IntAct (EBI)Q8NC51
FunCoupENSG00000142864
BioGRIDSERBP1
STRING (EMBL)SERBP1
ZODIACSERBP1
Ontologies - Pathways
QuickGOQ8NC51
Ontology : AmiGORNA binding  mRNA 3'-UTR binding  protein binding  nucleus  cytosol  plasma membrane  membrane  regulation of apoptotic process  regulation of mRNA stability  cadherin binding  perinuclear region of cytoplasm  extracellular exosome  
Ontology : EGO-EBIRNA binding  mRNA 3'-UTR binding  protein binding  nucleus  cytosol  plasma membrane  membrane  regulation of apoptotic process  regulation of mRNA stability  cadherin binding  perinuclear region of cytoplasm  extracellular exosome  
NDEx NetworkSERBP1
Atlas of Cancer Signalling NetworkSERBP1
Wikipedia pathwaysSERBP1
Orthology - Evolution
OrthoDB26135
GeneTree (enSembl)ENSG00000142864
Phylogenetic Trees/Animal Genes : TreeFamSERBP1
HOVERGENQ8NC51
HOGENOMQ8NC51
Homologs : HomoloGeneSERBP1
Homology/Alignments : Family Browser (UCSC)SERBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERBP1
dbVarSERBP1
ClinVarSERBP1
1000_GenomesSERBP1 
Exome Variant ServerSERBP1
ExAC (Exome Aggregation Consortium)SERBP1 (select the gene name)
Genetic variants : HAPMAP26135
Genomic Variants (DGV)SERBP1 [DGVbeta]
DECIPHERSERBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERBP1 
Mutations
ICGC Data PortalSERBP1 
TCGA Data PortalSERBP1 
Broad Tumor PortalSERBP1
OASIS PortalSERBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERBP1
DgiDB (Drug Gene Interaction Database)SERBP1
DoCM (Curated mutations)SERBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERBP1 (select a term)
intoGenSERBP1
Cancer3DSERBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607378   
Orphanet
MedgenSERBP1
Genetic Testing Registry SERBP1
NextProtQ8NC51 [Medical]
TSGene26135
GENETestsSERBP1
Huge Navigator SERBP1 [HugePedia]
snp3D : Map Gene to Disease26135
BioCentury BCIQSERBP1
ClinGenSERBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26135
Chemical/Pharm GKB GenePA413
Clinical trialSERBP1
Miscellaneous
canSAR (ICR)SERBP1 (select the gene name)
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERBP1
EVEXSERBP1
GoPubMedSERBP1
iHOPSERBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:36:38 CEST 2017

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