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SERF1A (small EDRK-rich factor 1A)

Identity

Alias_namesSERF1
small EDRK-rich factor 1A (telomeric)
Alias_symbol (synonym)H4F5
4F5
FAM2A
SMAM1
Other alias
HGNC (Hugo) SERF1A
LocusID (NCBI) 8293
Atlas_Id 73131
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 70025245 and ends at 70043113 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERF1A   10755
Cards
Entrez_Gene (NCBI)SERF1A  8293  small EDRK-rich factor 1A
Aliases4F5; FAM2A; H4F5; SERF1; 
SMAM1
GeneCards (Weizmann)SERF1A
Ensembl hg19 (Hinxton)ENSG00000172058 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172058 [Gene_View]  chr5:70025245-70043113 [Contig_View]  SERF1A [Vega]
ICGC DataPortalENSG00000172058
TCGA cBioPortalSERF1A
AceView (NCBI)SERF1A
Genatlas (Paris)SERF1A
WikiGenes8293
SOURCE (Princeton)SERF1A
Genetics Home Reference (NIH)SERF1A
Genomic and cartography
GoldenPath hg38 (UCSC)SERF1A  -     chr5:70025245-70043113 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERF1A  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblSERF1A - 5q13.2 [CytoView hg19]  SERF1A - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBISERF1A [Mapview hg19]  SERF1A [Mapview hg38]
OMIM603011   
Gene and transcription
Genbank (Entrez)AF073518 AF073519 AF073520 BC021174 BC035932
RefSeq transcript (Entrez)NM_021967 NM_022968
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_187651 NW_003315917
Consensus coding sequences : CCDS (NCBI)SERF1A
Cluster EST : UnigeneHs.726820 [ NCBI ]
CGAP (NCI)Hs.726820
Alternative Splicing GalleryENSG00000172058
Gene ExpressionSERF1A [ NCBI-GEO ]   SERF1A [ EBI - ARRAY_EXPRESS ]   SERF1A [ SEEK ]   SERF1A [ MEM ]
Gene Expression Viewer (FireBrowse)SERF1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8293
GTEX Portal (Tissue expression)SERF1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75920   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75920  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75920
Splice isoforms : SwissVarO75920
PhosPhoSitePlusO75920
Domains : Interpro (EBI)Uncharacterised_SERF   
Domain families : Pfam (Sanger)4F5 (PF04419)   
Domain families : Pfam (NCBI)pfam04419   
Conserved Domain (NCBI)SERF1A
DMDM Disease mutations8293
Blocks (Seattle)SERF1A
SuperfamilyO75920
Human Protein AtlasENSG00000172058
Peptide AtlasO75920
HPRD04308
IPIIPI00010689   IPI00179265   IPI00968190   IPI00966952   IPI00967972   IPI00981686   IPI00979802   IPI00981085   
Protein Interaction databases
DIP (DOE-UCLA)O75920
IntAct (EBI)O75920
FunCoupENSG00000172058
BioGRIDSERF1A
STRING (EMBL)SERF1A
ZODIACSERF1A
Ontologies - Pathways
QuickGOO75920
Ontology : AmiGOmolecular_function  cellular_component  nervous system development  
Ontology : EGO-EBImolecular_function  cellular_component  nervous system development  
NDEx NetworkSERF1A
Atlas of Cancer Signalling NetworkSERF1A
Wikipedia pathwaysSERF1A
Orthology - Evolution
OrthoDB8293
GeneTree (enSembl)ENSG00000172058
Phylogenetic Trees/Animal Genes : TreeFamSERF1A
HOVERGENO75920
HOGENOMO75920
Homologs : HomoloGeneSERF1A
Homology/Alignments : Family Browser (UCSC)SERF1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERF1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERF1A
dbVarSERF1A
ClinVarSERF1A
1000_GenomesSERF1A 
Exome Variant ServerSERF1A
ExAC (Exome Aggregation Consortium)SERF1A (select the gene name)
Genetic variants : HAPMAP8293
Genomic Variants (DGV)SERF1A [DGVbeta]
DECIPHERSERF1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERF1A 
Mutations
ICGC Data PortalSERF1A 
TCGA Data PortalSERF1A 
Broad Tumor PortalSERF1A
OASIS PortalSERF1A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSERF1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERF1A
DgiDB (Drug Gene Interaction Database)SERF1A
DoCM (Curated mutations)SERF1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERF1A (select a term)
intoGenSERF1A
Cancer3DSERF1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603011   
Orphanet
MedgenSERF1A
Genetic Testing Registry SERF1A
NextProtO75920 [Medical]
TSGene8293
GENETestsSERF1A
Target ValidationSERF1A
Huge Navigator SERF1A [HugePedia]
snp3D : Map Gene to Disease8293
BioCentury BCIQSERF1A
ClinGenSERF1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8293
Chemical/Pharm GKB GenePA35675
Clinical trialSERF1A
Miscellaneous
canSAR (ICR)SERF1A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERF1A
EVEXSERF1A
GoPubMedSERF1A
iHOPSERF1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:25 CEST 2017

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