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SERF1B (small EDRK-rich factor 1B (centromeric))

Identity

Alias_namessmall EDRK-rich factor 1B (centromeric)
Alias_symbol (synonym)FAM2B
H4F5C
Other aliash4F5
HGNC (Hugo) SERF1B
LocusID (NCBI) 728492
Atlas_Id 73132
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69321078 and ends at 69328523 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERF1B   10756
Cards
Entrez_Gene (NCBI)SERF1B  728492  small EDRK-rich factor 1B (centromeric)
AliasesFAM2B; H4F5C; h4F5
GeneCards (Weizmann)SERF1B
Ensembl hg19 (Hinxton)ENSG00000205572 [Gene_View]  chr5:69321078-69328523 [Contig_View]  SERF1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000205572 [Gene_View]  chr5:69321078-69328523 [Contig_View]  SERF1B [Vega]
ICGC DataPortalENSG00000205572
TCGA cBioPortalSERF1B
AceView (NCBI)SERF1B
Genatlas (Paris)SERF1B
WikiGenes728492
SOURCE (Princeton)SERF1B
Genetics Home Reference (NIH)SERF1B
Genomic and cartography
GoldenPath hg19 (UCSC)SERF1B  -     chr5:69321078-69328523 +  5q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SERF1B  -     5q13.2   [Description]    (hg38-Dec_2013)
EnsemblSERF1B - 5q13.2 [CytoView hg19]  SERF1B - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBISERF1B [Mapview hg19]  SERF1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC101970 BC103687 BC104738 BC143255 BC143260
RefSeq transcript (Entrez)NM_001178087 NM_022978
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NT_187651 NW_004929322
Consensus coding sequences : CCDS (NCBI)SERF1B
Cluster EST : UnigeneHs.559428 [ NCBI ]
CGAP (NCI)Hs.559428
Alternative Splicing GalleryENSG00000205572
Gene ExpressionSERF1B [ NCBI-GEO ]   SERF1B [ EBI - ARRAY_EXPRESS ]   SERF1B [ SEEK ]   SERF1B [ MEM ]
Gene Expression Viewer (FireBrowse)SERF1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728492
GTEX Portal (Tissue expression)SERF1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75920   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75920  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75920
Splice isoforms : SwissVarO75920
PhosPhoSitePlusO75920
Domains : Interpro (EBI)Uncharacterised_SERF   
Domain families : Pfam (Sanger)4F5 (PF04419)   
Domain families : Pfam (NCBI)pfam04419   
Conserved Domain (NCBI)SERF1B
DMDM Disease mutations728492
Blocks (Seattle)SERF1B
SuperfamilyO75920
Human Protein AtlasENSG00000205572
Peptide AtlasO75920
Protein Interaction databases
DIP (DOE-UCLA)O75920
IntAct (EBI)O75920
FunCoupENSG00000205572
BioGRIDSERF1B
STRING (EMBL)SERF1B
ZODIACSERF1B
Ontologies - Pathways
QuickGOO75920
Ontology : AmiGOmolecular_function  cellular_component  nervous system development  
Ontology : EGO-EBImolecular_function  cellular_component  nervous system development  
NDEx NetworkSERF1B
Atlas of Cancer Signalling NetworkSERF1B
Wikipedia pathwaysSERF1B
Orthology - Evolution
OrthoDB728492
GeneTree (enSembl)ENSG00000205572
Phylogenetic Trees/Animal Genes : TreeFamSERF1B
HOVERGENO75920
HOGENOMO75920
Homologs : HomoloGeneSERF1B
Homology/Alignments : Family Browser (UCSC)SERF1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERF1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERF1B
dbVarSERF1B
ClinVarSERF1B
1000_GenomesSERF1B 
Exome Variant ServerSERF1B
ExAC (Exome Aggregation Consortium)SERF1B (select the gene name)
Genetic variants : HAPMAP728492
Genomic Variants (DGV)SERF1B [DGVbeta]
DECIPHER (Syndromes)5:69321078-69328523  ENSG00000205572
CONAN: Copy Number AnalysisSERF1B 
Mutations
ICGC Data PortalSERF1B 
TCGA Data PortalSERF1B 
Broad Tumor PortalSERF1B
OASIS PortalSERF1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERF1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERF1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERF1B
DgiDB (Drug Gene Interaction Database)SERF1B
DoCM (Curated mutations)SERF1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERF1B (select a term)
intoGenSERF1B
Cancer3DSERF1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSERF1B
Genetic Testing Registry SERF1B
NextProtO75920 [Medical]
TSGene728492
GENETestsSERF1B
Huge Navigator SERF1B [HugePedia]
snp3D : Map Gene to Disease728492
BioCentury BCIQSERF1B
ClinGenSERF1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728492
Chemical/Pharm GKB GenePA35676
Clinical trialSERF1B
Miscellaneous
canSAR (ICR)SERF1B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERF1B
EVEXSERF1B
GoPubMedSERF1B
iHOPSERF1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:51 CET 2017

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