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SERF1B (small EDRK-rich factor 1B)

Identity

Alias (NCBI)FAM2B
H4F5C
h4F5
HGNC (Hugo) SERF1B
HGNC Alias symbFAM2B
H4F5C
HGNC Previous namesmall EDRK-rich factor 1B (centromeric)
LocusID (NCBI) 728492
Atlas_Id 73132
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 70025251 and ends at 70043113 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SERF1B   10756
Cards
Entrez_Gene (NCBI)SERF1B    small EDRK-rich factor 1B
AliasesFAM2B; H4F5C; h4F5
GeneCards (Weizmann)SERF1B
Ensembl hg19 (Hinxton)ENSG00000205572 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205572 [Gene_View]  ENSG00000205572 [Sequence]  chr5:70025251-70043113 [Contig_View]  SERF1B [Vega]
ICGC DataPortalENSG00000205572
TCGA cBioPortalSERF1B
AceView (NCBI)SERF1B
Genatlas (Paris)SERF1B
SOURCE (Princeton)SERF1B
Genetics Home Reference (NIH)SERF1B
Genomic and cartography
GoldenPath hg38 (UCSC)SERF1B  -     chr5:70025251-70043113 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERF1B  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathSERF1B - 5q13.2 [CytoView hg19]  SERF1B - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000205572
Genome Data Viewer NCBISERF1B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC101970 BC103687 BC104738 BC143255 BC143260
RefSeq transcript (Entrez)NM_001178087 NM_022978
Consensus coding sequences : CCDS (NCBI)SERF1B
Gene ExpressionSERF1B [ NCBI-GEO ]   SERF1B [ EBI - ARRAY_EXPRESS ]   SERF1B [ SEEK ]   SERF1B [ MEM ]
Gene Expression Viewer (FireBrowse)SERF1B [ Firebrowse - Broad ]
GenevisibleExpression of SERF1B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728492
GTEX Portal (Tissue expression)SERF1B
Human Protein AtlasENSG00000205572-SERF1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75920   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75920  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75920
PhosPhoSitePlusO75920
Domains : Interpro (EBI)SERF1/2    Uncharacterised_SERF_N   
Domain families : Pfam (Sanger)4F5 (PF04419)   
Domain families : Pfam (NCBI)pfam04419   
Conserved Domain (NCBI)SERF1B
SuperfamilyO75920
AlphaFold pdb e-kbO75920   
Human Protein Atlas [tissue]ENSG00000205572-SERF1B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O75920
IntAct (EBI)O75920
BioGRIDSERF1B
STRING (EMBL)SERF1B
ZODIACSERF1B
Ontologies - Pathways
QuickGOO75920
Ontology : AmiGOmolecular_function  protein binding  nucleus  cytosol  nervous system development  protein destabilization  protein-containing complex  amyloid fibril formation  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  cytosol  nervous system development  protein destabilization  protein-containing complex  amyloid fibril formation  
NDEx NetworkSERF1B
Atlas of Cancer Signalling NetworkSERF1B
Wikipedia pathwaysSERF1B
Orthology - Evolution
OrthoDB728492
GeneTree (enSembl)ENSG00000205572
Phylogenetic Trees/Animal Genes : TreeFamSERF1B
Homologs : HomoloGeneSERF1B
Homology/Alignments : Family Browser (UCSC)SERF1B
Gene fusions - Rearrangements
Fusion : QuiverSERF1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERF1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERF1B
dbVarSERF1B
ClinVarSERF1B
MonarchSERF1B
1000_GenomesSERF1B 
Exome Variant ServerSERF1B
GNOMAD BrowserENSG00000205572
Varsome BrowserSERF1B
ACMGSERF1B variants
VarityO75920
Genomic Variants (DGV)SERF1B [DGVbeta]
DECIPHERSERF1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERF1B 
Mutations
ICGC Data PortalSERF1B 
TCGA Data PortalSERF1B 
Broad Tumor PortalSERF1B
OASIS PortalSERF1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERF1B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSERF1B
Mutations and Diseases : HGMDSERF1B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSERF1B
DgiDB (Drug Gene Interaction Database)SERF1B
DoCM (Curated mutations)SERF1B
CIViC (Clinical Interpretations of Variants in Cancer)SERF1B
Cancer3DSERF1B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSERF1B
MedgenSERF1B
Genetic Testing Registry SERF1B
NextProtO75920 [Medical]
GENETestsSERF1B
Target ValidationSERF1B
Huge Navigator SERF1B [HugePedia]
ClinGenSERF1B
Clinical trials, drugs, therapy
MyCancerGenomeSERF1B
Protein Interactions : CTDSERF1B
Pharm GKB GenePA35676
PharosO75920
Clinical trialSERF1B
Miscellaneous
canSAR (ICR)SERF1B
HarmonizomeSERF1B
ARCHS4SERF1B
DataMed IndexSERF1B
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSERF1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:23:40 CET 2022

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