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SERF2 (small EDRK-rich factor 2)

Identity

Alias_symbol (synonym)H4F5rel
4F5REL
FAM2C
HsT17089
Other aliasH4F5REL
HGNC (Hugo) SERF2
LocusID (NCBI) 10169
Atlas_Id 54609
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43791842 and ends at 43796089 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MBTPS1 (16q23.3) / SERF2 (15q15.3)SERF2 (15q15.3) / HYPK (15q15.3)SERF2 (15q15.3) / PDIA3 (15q15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERF2   10757
Cards
Entrez_Gene (NCBI)SERF2  10169  small EDRK-rich factor 2
Aliases4F5REL; FAM2C; H4F5REL; HsT17089
GeneCards (Weizmann)SERF2
Ensembl hg19 (Hinxton)ENSG00000140264 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140264 [Gene_View]  chr15:43791842-43796089 [Contig_View]  SERF2 [Vega]
ICGC DataPortalENSG00000140264
TCGA cBioPortalSERF2
AceView (NCBI)SERF2
Genatlas (Paris)SERF2
WikiGenes10169
SOURCE (Princeton)SERF2
Genetics Home Reference (NIH)SERF2
Genomic and cartography
GoldenPath hg38 (UCSC)SERF2  -     chr15:43791842-43796089 +  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERF2  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblSERF2 - 15q15.3 [CytoView hg19]  SERF2 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBISERF2 [Mapview hg19]  SERF2 [Mapview hg38]
OMIM605054   
Gene and transcription
Genbank (Entrez)AF073298 AF320073 AK000479 AK094846 AK307547
RefSeq transcript (Entrez)NM_001018108 NM_001199875 NM_001199876 NM_001199877 NM_001199878 NM_005770
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERF2
Cluster EST : UnigeneHs.732549 [ NCBI ]
CGAP (NCI)Hs.732549
Alternative Splicing GalleryENSG00000140264
Gene ExpressionSERF2 [ NCBI-GEO ]   SERF2 [ EBI - ARRAY_EXPRESS ]   SERF2 [ SEEK ]   SERF2 [ MEM ]
Gene Expression Viewer (FireBrowse)SERF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10169
GTEX Portal (Tissue expression)SERF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP84101   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP84101  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP84101
Splice isoforms : SwissVarP84101
PhosPhoSitePlusP84101
Domains : Interpro (EBI)Uncharacterised_SERF   
Domain families : Pfam (Sanger)4F5 (PF04419)   
Domain families : Pfam (NCBI)pfam04419   
Conserved Domain (NCBI)SERF2
DMDM Disease mutations10169
Blocks (Seattle)SERF2
SuperfamilyP84101
Human Protein AtlasENSG00000140264
Peptide AtlasP84101
HPRD05447
IPIIPI00024781   IPI00794076   IPI00877880   IPI00894485   IPI00917901   IPI00917709   IPI00788713   IPI00916205   IPI00924857   
Protein Interaction databases
DIP (DOE-UCLA)P84101
IntAct (EBI)P84101
FunCoupENSG00000140264
BioGRIDSERF2
STRING (EMBL)SERF2
ZODIACSERF2
Ontologies - Pathways
QuickGOP84101
Ontology : AmiGOmolecular_function  nucleus  cytosol  biological_process  
Ontology : EGO-EBImolecular_function  nucleus  cytosol  biological_process  
NDEx NetworkSERF2
Atlas of Cancer Signalling NetworkSERF2
Wikipedia pathwaysSERF2
Orthology - Evolution
OrthoDB10169
GeneTree (enSembl)ENSG00000140264
Phylogenetic Trees/Animal Genes : TreeFamSERF2
HOVERGENP84101
HOGENOMP84101
Homologs : HomoloGeneSERF2
Homology/Alignments : Family Browser (UCSC)SERF2
Gene fusions - Rearrangements
Fusion : MitelmanMBTPS1/SERF2 [16q23.3/15q15.3]  [t(15;16)(q15;q23)]  
Fusion : MitelmanSERF2/PDIA3 [15q15.3/15q15.3]  [t(15;15)(q15;q15)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERF2
dbVarSERF2
ClinVarSERF2
1000_GenomesSERF2 
Exome Variant ServerSERF2
ExAC (Exome Aggregation Consortium)SERF2 (select the gene name)
Genetic variants : HAPMAP10169
Genomic Variants (DGV)SERF2 [DGVbeta]
DECIPHERSERF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERF2 
Mutations
ICGC Data PortalSERF2 
TCGA Data PortalSERF2 
Broad Tumor PortalSERF2
OASIS PortalSERF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERF2
DgiDB (Drug Gene Interaction Database)SERF2
DoCM (Curated mutations)SERF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERF2 (select a term)
intoGenSERF2
Cancer3DSERF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605054   
Orphanet
MedgenSERF2
Genetic Testing Registry SERF2
NextProtP84101 [Medical]
TSGene10169
GENETestsSERF2
Target ValidationSERF2
Huge Navigator SERF2 [HugePedia]
snp3D : Map Gene to Disease10169
BioCentury BCIQSERF2
ClinGenSERF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10169
Chemical/Pharm GKB GenePA35677
Clinical trialSERF2
Miscellaneous
canSAR (ICR)SERF2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERF2
EVEXSERF2
GoPubMedSERF2
iHOPSERF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:56 CEST 2017

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