Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SERHL (serine hydrolase-like (pseudogene))

Identity

Alias_namesserine hydrolase-like
Alias_symbol (synonym)HS126B42
BK126B4.1
dJ222E13.1
Other aliasBK126B4.2
HGNC (Hugo) SERHL
LocusID (NCBI) 94009
Atlas_Id 73134
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42896585 and ends at 42908565 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SERHL (22q13.2) / RANBP9 (6p23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERHL   14408
Cards
Entrez_Gene (NCBI)SERHL  94009  serine hydrolase-like (pseudogene)
AliasesBK126B4.1; BK126B4.2; HS126B42; dJ222E13.1
GeneCards (Weizmann)SERHL
Ensembl hg19 (Hinxton)ENSG00000172250 [Gene_View]  chr22:42896585-42908565 [Contig_View]  SERHL [Vega]
Ensembl hg38 (Hinxton)ENSG00000172250 [Gene_View]  chr22:42896585-42908565 [Contig_View]  SERHL [Vega]
ICGC DataPortalENSG00000172250
TCGA cBioPortalSERHL
AceView (NCBI)SERHL
Genatlas (Paris)SERHL
WikiGenes94009
SOURCE (Princeton)SERHL
Genetics Home Reference (NIH)SERHL
Genomic and cartography
GoldenPath hg19 (UCSC)SERHL  -     chr22:42896585-42908565 +  22q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SERHL  -     22q13.2   [Description]    (hg38-Dec_2013)
EnsemblSERHL - 22q13.2 [CytoView hg19]  SERHL - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISERHL [Mapview hg19]  SERHL [Mapview hg38]
OMIM607979   
Gene and transcription
Genbank (Entrez)AK094872 AL365513 BC093888 DA273263
RefSeq transcript (Entrez)NM_170694
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)SERHL
Cluster EST : UnigeneHs.360940 [ NCBI ]
CGAP (NCI)Hs.360940
Alternative Splicing GalleryENSG00000172250
Gene ExpressionSERHL [ NCBI-GEO ]   SERHL [ EBI - ARRAY_EXPRESS ]   SERHL [ SEEK ]   SERHL [ MEM ]
Gene Expression Viewer (FireBrowse)SERHL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94009
GTEX Portal (Tissue expression)SERHL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQF3
Splice isoforms : SwissVarQ9NQF3
PhosPhoSitePlusQ9NQF3
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1   
Domain families : Pfam (Sanger)Abhydrolase_6 (PF12697)   
Domain families : Pfam (NCBI)pfam12697   
Conserved Domain (NCBI)SERHL
DMDM Disease mutations94009
Blocks (Seattle)SERHL
SuperfamilyQ9NQF3
Human Protein AtlasENSG00000172250
Peptide AtlasQ9NQF3
HPRD10465
IPIIPI00071447   IPI00646723   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQF3
IntAct (EBI)Q9NQF3
FunCoupENSG00000172250
BioGRIDSERHL
STRING (EMBL)SERHL
ZODIACSERHL
Ontologies - Pathways
QuickGOQ9NQF3
Ontology : AmiGOmolecular_function  cellular_component  biological_process  metabolic process  hydrolase activity  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  metabolic process  hydrolase activity  
NDEx NetworkSERHL
Atlas of Cancer Signalling NetworkSERHL
Wikipedia pathwaysSERHL
Orthology - Evolution
OrthoDB94009
GeneTree (enSembl)ENSG00000172250
Phylogenetic Trees/Animal Genes : TreeFamSERHL
HOVERGENQ9NQF3
HOGENOMQ9NQF3
Homologs : HomoloGeneSERHL
Homology/Alignments : Family Browser (UCSC)SERHL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERHL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERHL
dbVarSERHL
ClinVarSERHL
1000_GenomesSERHL 
Exome Variant ServerSERHL
ExAC (Exome Aggregation Consortium)SERHL (select the gene name)
Genetic variants : HAPMAP94009
Genomic Variants (DGV)SERHL [DGVbeta]
DECIPHER (Syndromes)22:42896585-42908565  ENSG00000172250
CONAN: Copy Number AnalysisSERHL 
Mutations
ICGC Data PortalSERHL 
TCGA Data PortalSERHL 
Broad Tumor PortalSERHL
OASIS PortalSERHL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERHL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERHL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERHL
DgiDB (Drug Gene Interaction Database)SERHL
DoCM (Curated mutations)SERHL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERHL (select a term)
intoGenSERHL
Cancer3DSERHL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607979   
Orphanet
MedgenSERHL
Genetic Testing Registry SERHL
NextProtQ9NQF3 [Medical]
TSGene94009
GENETestsSERHL
Huge Navigator SERHL [HugePedia]
snp3D : Map Gene to Disease94009
BioCentury BCIQSERHL
ClinGenSERHL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94009
Chemical/Pharm GKB GenePA37878
Clinical trialSERHL
Miscellaneous
canSAR (ICR)SERHL (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERHL
EVEXSERHL
GoPubMedSERHL
iHOPSERHL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:51 CET 2017

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