Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SERHL2 (serine hydrolase like 2)

Identity

Other aliasdJ222E13.1
HGNC (Hugo) SERHL2
LocusID (NCBI) 253190
Atlas_Id 73135
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42553862 and ends at 42574382 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
THSD4 (15q23) / SERHL2 (22q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERHL2   29446
Cards
Entrez_Gene (NCBI)SERHL2  253190  serine hydrolase like 2
AliasesdJ222E13.1
GeneCards (Weizmann)SERHL2
Ensembl hg19 (Hinxton)ENSG00000183569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183569 [Gene_View]  chr22:42553862-42574382 [Contig_View]  SERHL2 [Vega]
ICGC DataPortalENSG00000183569
TCGA cBioPortalSERHL2
AceView (NCBI)SERHL2
Genatlas (Paris)SERHL2
WikiGenes253190
SOURCE (Princeton)SERHL2
Genetics Home Reference (NIH)SERHL2
Genomic and cartography
GoldenPath hg38 (UCSC)SERHL2  -     chr22:42553862-42574382 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERHL2  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblSERHL2 - 22q13.2 [CytoView hg19]  SERHL2 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISERHL2 [Mapview hg19]  SERHL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294584 AK295223 AL450314 AL589866 AL590118
RefSeq transcript (Entrez)NM_001284334 NM_014509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERHL2
Cluster EST : UnigeneHs.728878 [ NCBI ]
CGAP (NCI)Hs.728878
Alternative Splicing GalleryENSG00000183569
Gene ExpressionSERHL2 [ NCBI-GEO ]   SERHL2 [ EBI - ARRAY_EXPRESS ]   SERHL2 [ SEEK ]   SERHL2 [ MEM ]
Gene Expression Viewer (FireBrowse)SERHL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253190
GTEX Portal (Tissue expression)SERHL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4I8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4I8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4I8
Splice isoforms : SwissVarQ9H4I8
PhosPhoSitePlusQ9H4I8
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)SERHL2
DMDM Disease mutations253190
Blocks (Seattle)SERHL2
SuperfamilyQ9H4I8
Human Protein AtlasENSG00000183569
Peptide AtlasQ9H4I8
HPRD15908
IPIIPI00022751   IPI00221019   IPI00221022   IPI00471977   IPI00878607   IPI00477473   IPI00879432   IPI00980357   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4I8
IntAct (EBI)Q9H4I8
FunCoupENSG00000183569
BioGRIDSERHL2
STRING (EMBL)SERHL2
ZODIACSERHL2
Ontologies - Pathways
QuickGOQ9H4I8
Ontology : AmiGOmolecular_function  cellular_component  mitochondrion  peroxisome  biological_process  hydrolase activity  cytoplasmic vesicle  perinuclear region of cytoplasm  
Ontology : EGO-EBImolecular_function  cellular_component  mitochondrion  peroxisome  biological_process  hydrolase activity  cytoplasmic vesicle  perinuclear region of cytoplasm  
NDEx NetworkSERHL2
Atlas of Cancer Signalling NetworkSERHL2
Wikipedia pathwaysSERHL2
Orthology - Evolution
OrthoDB253190
GeneTree (enSembl)ENSG00000183569
Phylogenetic Trees/Animal Genes : TreeFamSERHL2
HOVERGENQ9H4I8
HOGENOMQ9H4I8
Homologs : HomoloGeneSERHL2
Homology/Alignments : Family Browser (UCSC)SERHL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERHL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERHL2
dbVarSERHL2
ClinVarSERHL2
1000_GenomesSERHL2 
Exome Variant ServerSERHL2
ExAC (Exome Aggregation Consortium)SERHL2 (select the gene name)
Genetic variants : HAPMAP253190
Genomic Variants (DGV)SERHL2 [DGVbeta]
DECIPHERSERHL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERHL2 
Mutations
ICGC Data PortalSERHL2 
TCGA Data PortalSERHL2 
Broad Tumor PortalSERHL2
OASIS PortalSERHL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERHL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERHL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SERHL2
DgiDB (Drug Gene Interaction Database)SERHL2
DoCM (Curated mutations)SERHL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERHL2 (select a term)
intoGenSERHL2
Cancer3DSERHL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSERHL2
Genetic Testing Registry SERHL2
NextProtQ9H4I8 [Medical]
TSGene253190
GENETestsSERHL2
Target ValidationSERHL2
Huge Navigator SERHL2 [HugePedia]
snp3D : Map Gene to Disease253190
BioCentury BCIQSERHL2
ClinGenSERHL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253190
Chemical/Pharm GKB GenePA142670935
Clinical trialSERHL2
Miscellaneous
canSAR (ICR)SERHL2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERHL2
EVEXSERHL2
GoPubMedSERHL2
iHOPSERHL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:25 CEST 2017

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