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SERINC4 (serine incorporator 4)

Identity

Alias_symbol (synonym)FLJ40363
Other alias-
HGNC (Hugo) SERINC4
LocusID (NCBI) 619189
Atlas_Id 73136
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43794174 and ends at 43800097 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERINC4   32237
Cards
Entrez_Gene (NCBI)SERINC4  619189  serine incorporator 4
Aliases
GeneCards (Weizmann)SERINC4
Ensembl hg19 (Hinxton)ENSG00000184716 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184716 [Gene_View]  chr15:43794174-43800097 [Contig_View]  SERINC4 [Vega]
ICGC DataPortalENSG00000184716
TCGA cBioPortalSERINC4
AceView (NCBI)SERINC4
Genatlas (Paris)SERINC4
WikiGenes619189
SOURCE (Princeton)SERINC4
Genetics Home Reference (NIH)SERINC4
Genomic and cartography
GoldenPath hg38 (UCSC)SERINC4  -     chr15:43794174-43800097 -  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERINC4  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblSERINC4 - 15q15.3 [CytoView hg19]  SERINC4 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBISERINC4 [Mapview hg19]  SERINC4 [Mapview hg38]
OMIM614550   
Gene and transcription
Genbank (Entrez)AK097682 BC112349 BC136669 BX647438 DQ103711
RefSeq transcript (Entrez)NM_001258031 NM_001258032
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERINC4
Cluster EST : UnigeneHs.604985 [ NCBI ]
CGAP (NCI)Hs.604985
Alternative Splicing GalleryENSG00000184716
Gene ExpressionSERINC4 [ NCBI-GEO ]   SERINC4 [ EBI - ARRAY_EXPRESS ]   SERINC4 [ SEEK ]   SERINC4 [ MEM ]
Gene Expression Viewer (FireBrowse)SERINC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)619189
GTEX Portal (Tissue expression)SERINC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NH21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NH21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NH21
Splice isoforms : SwissVarA6NH21
PhosPhoSitePlusA6NH21
Domains : Interpro (EBI)Serinc4    TDE1/TMS   
Domain families : Pfam (Sanger)Serinc (PF03348)   
Domain families : Pfam (NCBI)pfam03348   
Conserved Domain (NCBI)SERINC4
DMDM Disease mutations619189
Blocks (Seattle)SERINC4
SuperfamilyA6NH21
Human Protein AtlasENSG00000184716
Peptide AtlasA6NH21
IPIIPI00415008   IPI00871375   IPI00093983   IPI00879426   IPI00878259   IPI00878565   IPI00878735   
Protein Interaction databases
DIP (DOE-UCLA)A6NH21
IntAct (EBI)A6NH21
FunCoupENSG00000184716
BioGRIDSERINC4
STRING (EMBL)SERINC4
ZODIACSERINC4
Ontologies - Pathways
QuickGOA6NH21
Ontology : AmiGOphospholipid biosynthetic process  L-serine transmembrane transporter activity  L-serine transport  integral component of membrane  
Ontology : EGO-EBIphospholipid biosynthetic process  L-serine transmembrane transporter activity  L-serine transport  integral component of membrane  
NDEx NetworkSERINC4
Atlas of Cancer Signalling NetworkSERINC4
Wikipedia pathwaysSERINC4
Orthology - Evolution
OrthoDB619189
GeneTree (enSembl)ENSG00000184716
Phylogenetic Trees/Animal Genes : TreeFamSERINC4
HOVERGENA6NH21
HOGENOMA6NH21
Homologs : HomoloGeneSERINC4
Homology/Alignments : Family Browser (UCSC)SERINC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERINC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERINC4
dbVarSERINC4
ClinVarSERINC4
1000_GenomesSERINC4 
Exome Variant ServerSERINC4
ExAC (Exome Aggregation Consortium)SERINC4 (select the gene name)
Genetic variants : HAPMAP619189
Genomic Variants (DGV)SERINC4 [DGVbeta]
DECIPHERSERINC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERINC4 
Mutations
ICGC Data PortalSERINC4 
TCGA Data PortalSERINC4 
Broad Tumor PortalSERINC4
OASIS PortalSERINC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERINC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERINC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERINC4
DgiDB (Drug Gene Interaction Database)SERINC4
DoCM (Curated mutations)SERINC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERINC4 (select a term)
intoGenSERINC4
Cancer3DSERINC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614550   
Orphanet
MedgenSERINC4
Genetic Testing Registry SERINC4
NextProtA6NH21 [Medical]
TSGene619189
GENETestsSERINC4
Target ValidationSERINC4
Huge Navigator SERINC4 [HugePedia]
snp3D : Map Gene to Disease619189
BioCentury BCIQSERINC4
ClinGenSERINC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD619189
Chemical/Pharm GKB GenePA142670936
Clinical trialSERINC4
Miscellaneous
canSAR (ICR)SERINC4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERINC4
EVEXSERINC4
GoPubMedSERINC4
iHOPSERINC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:26 CEST 2017

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