Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SERP1 (stress-associated endoplasmic reticulum protein 1)

Identity

Alias_symbol (synonym)RAMP4
FLJ43424
Other alias
HGNC (Hugo) SERP1
LocusID (NCBI) 27230
Atlas_Id 52906
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 150259780 and ends at 150264428 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SERP1 (3q25.1) / AKAP6 (14q12)SERP1 (3q25.1) / GLUL (1q25.3)SERP1 (3q25.1) / RABGAP1L (1q25.1)
SERP1 (3q25.1) / SRPK2 (7q22.3)SERP1 (3q25.1) / UNK (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERP1   10759
Cards
Entrez_Gene (NCBI)SERP1  27230  stress-associated endoplasmic reticulum protein 1
AliasesRAMP4
GeneCards (Weizmann)SERP1
Ensembl hg19 (Hinxton)ENSG00000120742 [Gene_View]  chr3:150259780-150264428 [Contig_View]  SERP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000120742 [Gene_View]  chr3:150259780-150264428 [Contig_View]  SERP1 [Vega]
ICGC DataPortalENSG00000120742
TCGA cBioPortalSERP1
AceView (NCBI)SERP1
Genatlas (Paris)SERP1
WikiGenes27230
SOURCE (Princeton)SERP1
Genetics Home Reference (NIH)SERP1
Genomic and cartography
GoldenPath hg19 (UCSC)SERP1  -     chr3:150259780-150264428 -  3q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SERP1  -     3q25.1   [Description]    (hg38-Dec_2013)
EnsemblSERP1 - 3q25.1 [CytoView hg19]  SERP1 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBISERP1 [Mapview hg19]  SERP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA890577 AB022427 AF136975 AK054644 AK090933
RefSeq transcript (Entrez)NM_014445
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)SERP1
Cluster EST : UnigeneHs.713956 [ NCBI ]
CGAP (NCI)Hs.713956
Alternative Splicing GalleryENSG00000120742
Gene ExpressionSERP1 [ NCBI-GEO ]   SERP1 [ EBI - ARRAY_EXPRESS ]   SERP1 [ SEEK ]   SERP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SERP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27230
GTEX Portal (Tissue expression)SERP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6X1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6X1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6X1
Splice isoforms : SwissVarQ9Y6X1
PhosPhoSitePlusQ9Y6X1
Domains : Interpro (EBI)ER_stress-assoc   
Domain families : Pfam (Sanger)RAMP4 (PF06624)   
Domain families : Pfam (NCBI)pfam06624   
Conserved Domain (NCBI)SERP1
DMDM Disease mutations27230
Blocks (Seattle)SERP1
SuperfamilyQ9Y6X1
Human Protein AtlasENSG00000120742
Peptide AtlasQ9Y6X1
HPRD18037
IPIIPI00004398   IPI00945397   IPI00797803   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6X1
IntAct (EBI)Q9Y6X1
FunCoupENSG00000120742
BioGRIDSERP1
STRING (EMBL)SERP1
ZODIACSERP1
Ontologies - Pathways
QuickGOQ9Y6X1
Ontology : AmiGOskeletal system development  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  cytosol  ribosome  cytoplasmic microtubule  glucose metabolic process  cellular protein modification process  protein glycosylation  response to stress  plasma membrane organization  post-embryonic development  multicellular organism aging  protein transport  integral component of membrane  endoplasmic reticulum unfolded protein response  positive regulation of insulin secretion  IRE1-mediated unfolded protein response  positive regulation of translation  positive regulation of organ growth  muscle organ morphogenesis  positive regulation of growth hormone secretion  
Ontology : EGO-EBIskeletal system development  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  cytosol  ribosome  cytoplasmic microtubule  glucose metabolic process  cellular protein modification process  protein glycosylation  response to stress  plasma membrane organization  post-embryonic development  multicellular organism aging  protein transport  integral component of membrane  endoplasmic reticulum unfolded protein response  positive regulation of insulin secretion  IRE1-mediated unfolded protein response  positive regulation of translation  positive regulation of organ growth  muscle organ morphogenesis  positive regulation of growth hormone secretion  
NDEx NetworkSERP1
Atlas of Cancer Signalling NetworkSERP1
Wikipedia pathwaysSERP1
Orthology - Evolution
OrthoDB27230
GeneTree (enSembl)ENSG00000120742
Phylogenetic Trees/Animal Genes : TreeFamSERP1
HOVERGENQ9Y6X1
HOGENOMQ9Y6X1
Homologs : HomoloGeneSERP1
Homology/Alignments : Family Browser (UCSC)SERP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERP1
dbVarSERP1
ClinVarSERP1
1000_GenomesSERP1 
Exome Variant ServerSERP1
ExAC (Exome Aggregation Consortium)SERP1 (select the gene name)
Genetic variants : HAPMAP27230
Genomic Variants (DGV)SERP1 [DGVbeta]
DECIPHER (Syndromes)3:150259780-150264428  ENSG00000120742
CONAN: Copy Number AnalysisSERP1 
Mutations
ICGC Data PortalSERP1 
TCGA Data PortalSERP1 
Broad Tumor PortalSERP1
OASIS PortalSERP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERP1
DgiDB (Drug Gene Interaction Database)SERP1
DoCM (Curated mutations)SERP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERP1 (select a term)
intoGenSERP1
Cancer3DSERP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSERP1
Genetic Testing Registry SERP1
NextProtQ9Y6X1 [Medical]
TSGene27230
GENETestsSERP1
Huge Navigator SERP1 [HugePedia]
snp3D : Map Gene to Disease27230
BioCentury BCIQSERP1
ClinGenSERP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27230
Chemical/Pharm GKB GenePA162402942
Clinical trialSERP1
Miscellaneous
canSAR (ICR)SERP1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERP1
EVEXSERP1
GoPubMedSERP1
iHOPSERP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:18:50 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.