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SERP2 (stress associated endoplasmic reticulum protein family member 2)

Identity

Alias_namesC13orf21
chromosome 13 open reading frame 21
Alias_symbol (synonym)bA269C23.1
Other alias
HGNC (Hugo) SERP2
LocusID (NCBI) 387923
Atlas_Id 73138
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 44373842 and ends at 44397714 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGR (1q32.1) / SERP2 (13q14.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERP2   20607
Cards
Entrez_Gene (NCBI)SERP2  387923  stress associated endoplasmic reticulum protein family member 2
AliasesC13orf21; bA269C23.1
GeneCards (Weizmann)SERP2
Ensembl hg19 (Hinxton)ENSG00000151778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151778 [Gene_View]  chr13:44373842-44397714 [Contig_View]  SERP2 [Vega]
ICGC DataPortalENSG00000151778
TCGA cBioPortalSERP2
AceView (NCBI)SERP2
Genatlas (Paris)SERP2
WikiGenes387923
SOURCE (Princeton)SERP2
Genetics Home Reference (NIH)SERP2
Genomic and cartography
GoldenPath hg38 (UCSC)SERP2  -     chr13:44373842-44397714 +  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERP2  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblSERP2 - 13q14.11 [CytoView hg19]  SERP2 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBISERP2 [Mapview hg19]  SERP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123212 BC029067
RefSeq transcript (Entrez)NM_001010897 NM_001346980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERP2
Cluster EST : UnigeneHs.377972 [ NCBI ]
CGAP (NCI)Hs.377972
Alternative Splicing GalleryENSG00000151778
Gene ExpressionSERP2 [ NCBI-GEO ]   SERP2 [ EBI - ARRAY_EXPRESS ]   SERP2 [ SEEK ]   SERP2 [ MEM ]
Gene Expression Viewer (FireBrowse)SERP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387923
GTEX Portal (Tissue expression)SERP2
Human Protein AtlasENSG00000151778-SERP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6R1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6R1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6R1
Splice isoforms : SwissVarQ8N6R1
PhosPhoSitePlusQ8N6R1
Domains : Interpro (EBI)ER_stress-assoc   
Domain families : Pfam (Sanger)RAMP4 (PF06624)   
Domain families : Pfam (NCBI)pfam06624   
Conserved Domain (NCBI)SERP2
DMDM Disease mutations387923
Blocks (Seattle)SERP2
SuperfamilyQ8N6R1
Human Protein Atlas [tissue]ENSG00000151778-SERP2 [tissue]
Peptide AtlasQ8N6R1
HPRD16590
IPIIPI00550842   IPI00981065   IPI00980248   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6R1
IntAct (EBI)Q8N6R1
FunCoupENSG00000151778
BioGRIDSERP2
STRING (EMBL)SERP2
ZODIACSERP2
Ontologies - Pathways
QuickGOQ8N6R1
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  protein glycosylation  protein transport  integral component of membrane  endoplasmic reticulum unfolded protein response  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  protein glycosylation  protein transport  integral component of membrane  endoplasmic reticulum unfolded protein response  
NDEx NetworkSERP2
Atlas of Cancer Signalling NetworkSERP2
Wikipedia pathwaysSERP2
Orthology - Evolution
OrthoDB387923
GeneTree (enSembl)ENSG00000151778
Phylogenetic Trees/Animal Genes : TreeFamSERP2
HOVERGENQ8N6R1
HOGENOMQ8N6R1
Homologs : HomoloGeneSERP2
Homology/Alignments : Family Browser (UCSC)SERP2
Gene fusions - Rearrangements
Tumor Fusion PortalSERP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERP2
dbVarSERP2
ClinVarSERP2
1000_GenomesSERP2 
Exome Variant ServerSERP2
ExAC (Exome Aggregation Consortium)ENSG00000151778
GNOMAD BrowserENSG00000151778
Genetic variants : HAPMAP387923
Genomic Variants (DGV)SERP2 [DGVbeta]
DECIPHERSERP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERP2 
Mutations
ICGC Data PortalSERP2 
TCGA Data PortalSERP2 
Broad Tumor PortalSERP2
OASIS PortalSERP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERP2
DgiDB (Drug Gene Interaction Database)SERP2
DoCM (Curated mutations)SERP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERP2 (select a term)
intoGenSERP2
Cancer3DSERP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSERP2
MedgenSERP2
Genetic Testing Registry SERP2
NextProtQ8N6R1 [Medical]
TSGene387923
GENETestsSERP2
Target ValidationSERP2
Huge Navigator SERP2 [HugePedia]
snp3D : Map Gene to Disease387923
BioCentury BCIQSERP2
ClinGenSERP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387923
Chemical/Pharm GKB GenePA162402953
Clinical trialSERP2
Miscellaneous
canSAR (ICR)SERP2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERP2
EVEXSERP2
GoPubMedSERP2
iHOPSERP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:28:55 CET 2017

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