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SERPINA13P (serpin family A member 13, pseudogene)

Identity

Alias_namesSERPINA13
serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13, pseudogene
Alias_symbol (synonym)UNQ6121
Other alias
HGNC (Hugo) SERPINA13P
LocusID (NCBI) 388007
Atlas_Id 73140
Location 14q32.13  [Link to chromosome band 14q32]
Location_base_pair Starts at 94640725 and ends at 94646994 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERPINA13P   30909
Cards
Entrez_Gene (NCBI)SERPINA13P  388007  serpin family A member 13, pseudogene
AliasesSERPINA13; UNQ6121
GeneCards (Weizmann)SERPINA13P
Ensembl hg19 (Hinxton)ENSG00000187483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187483 [Gene_View]  chr14:94640725-94646994 [Contig_View]  SERPINA13P [Vega]
ICGC DataPortalENSG00000187483
TCGA cBioPortalSERPINA13P
AceView (NCBI)SERPINA13P
Genatlas (Paris)SERPINA13P
WikiGenes388007
SOURCE (Princeton)SERPINA13P
Genetics Home Reference (NIH)SERPINA13P
Genomic and cartography
GoldenPath hg38 (UCSC)SERPINA13P  -     chr14:94640725-94646994 +  14q32.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERPINA13P  -     14q32.13   [Description]    (hg19-Feb_2009)
EnsemblSERPINA13P - 14q32.13 [CytoView hg19]  SERPINA13P - 14q32.13 [CytoView hg38]
Mapping of homologs : NCBISERPINA13P [Mapview hg19]  SERPINA13P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358238 BC156104 BC156896
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERPINA13P
Cluster EST : UnigeneHs.527795 [ NCBI ]
CGAP (NCI)Hs.527795
Alternative Splicing GalleryENSG00000187483
Gene ExpressionSERPINA13P [ NCBI-GEO ]   SERPINA13P [ EBI - ARRAY_EXPRESS ]   SERPINA13P [ SEEK ]   SERPINA13P [ MEM ]
Gene Expression Viewer (FireBrowse)SERPINA13P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388007
GTEX Portal (Tissue expression)SERPINA13P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXR4
Splice isoforms : SwissVarQ6UXR4
PhosPhoSitePlusQ6UXR4
Domains : Interpro (EBI)Serpin_dom    Serpin_fam   
Domain families : Pfam (Sanger)Serpin (PF00079)   
Domain families : Pfam (NCBI)pfam00079   
Domain families : Smart (EMBL)SERPIN (SM00093)  
Conserved Domain (NCBI)SERPINA13P
DMDM Disease mutations388007
Blocks (Seattle)SERPINA13P
SuperfamilyQ6UXR4
Human Protein AtlasENSG00000187483
Peptide AtlasQ6UXR4
HPRD18039
IPIIPI00410448   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXR4
IntAct (EBI)Q6UXR4
FunCoupENSG00000187483
BioGRIDSERPINA13P
STRING (EMBL)SERPINA13P
ZODIACSERPINA13P
Ontologies - Pathways
QuickGOQ6UXR4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSERPINA13P
Atlas of Cancer Signalling NetworkSERPINA13P
Wikipedia pathwaysSERPINA13P
Orthology - Evolution
OrthoDB388007
GeneTree (enSembl)ENSG00000187483
Phylogenetic Trees/Animal Genes : TreeFamSERPINA13P
HOVERGENQ6UXR4
HOGENOMQ6UXR4
Homologs : HomoloGeneSERPINA13P
Homology/Alignments : Family Browser (UCSC)SERPINA13P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERPINA13P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERPINA13P
dbVarSERPINA13P
ClinVarSERPINA13P
1000_GenomesSERPINA13P 
Exome Variant ServerSERPINA13P
ExAC (Exome Aggregation Consortium)SERPINA13P (select the gene name)
Genetic variants : HAPMAP388007
Genomic Variants (DGV)SERPINA13P [DGVbeta]
DECIPHERSERPINA13P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERPINA13P 
Mutations
ICGC Data PortalSERPINA13P 
TCGA Data PortalSERPINA13P 
Broad Tumor PortalSERPINA13P
OASIS PortalSERPINA13P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSERPINA13P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERPINA13P
DgiDB (Drug Gene Interaction Database)SERPINA13P
DoCM (Curated mutations)SERPINA13P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERPINA13P (select a term)
intoGenSERPINA13P
Cancer3DSERPINA13P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSERPINA13P
Genetic Testing Registry SERPINA13P
NextProtQ6UXR4 [Medical]
TSGene388007
GENETestsSERPINA13P
Target ValidationSERPINA13P
Huge Navigator SERPINA13P [HugePedia]
snp3D : Map Gene to Disease388007
BioCentury BCIQSERPINA13P
ClinGenSERPINA13P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388007
Chemical/Pharm GKB GenePA134904731
Clinical trialSERPINA13P
Miscellaneous
canSAR (ICR)SERPINA13P (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERPINA13P
EVEXSERPINA13P
GoPubMedSERPINA13P
iHOPSERPINA13P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:38:26 CEST 2017

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