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SERPINA7 (serpin family A member 7)

Identity

Alias_namesTBG
serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
Other aliasTBGQTL
HGNC (Hugo) SERPINA7
LocusID (NCBI) 6906
Atlas_Id 73143
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 106033199 and ends at 106038727 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERPINA7   11583
Cards
Entrez_Gene (NCBI)SERPINA7  6906  serpin family A member 7
AliasesTBG; TBGQTL
GeneCards (Weizmann)SERPINA7
Ensembl hg19 (Hinxton)ENSG00000123561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123561 [Gene_View]  chrX:106033199-106038727 [Contig_View]  SERPINA7 [Vega]
ICGC DataPortalENSG00000123561
TCGA cBioPortalSERPINA7
AceView (NCBI)SERPINA7
Genatlas (Paris)SERPINA7
WikiGenes6906
SOURCE (Princeton)SERPINA7
Genetics Home Reference (NIH)SERPINA7
Genomic and cartography
GoldenPath hg38 (UCSC)SERPINA7  -     chrX:106033199-106038727 -  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERPINA7  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblSERPINA7 - Xq22.3 [CytoView hg19]  SERPINA7 - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBISERPINA7 [Mapview hg19]  SERPINA7 [Mapview hg38]
OMIM300932   314200   
Gene and transcription
Genbank (Entrez)AK310778 BC020747 BJ996322 DQ891987 DQ895177
RefSeq transcript (Entrez)NM_000354
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERPINA7
Cluster EST : UnigeneHs.76838 [ NCBI ]
CGAP (NCI)Hs.76838
Alternative Splicing GalleryENSG00000123561
Gene ExpressionSERPINA7 [ NCBI-GEO ]   SERPINA7 [ EBI - ARRAY_EXPRESS ]   SERPINA7 [ SEEK ]   SERPINA7 [ MEM ]
Gene Expression Viewer (FireBrowse)SERPINA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6906
GTEX Portal (Tissue expression)SERPINA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05543
Splice isoforms : SwissVarP05543
PhosPhoSitePlusP05543
Domaine pattern : Prosite (Expaxy)SERPIN (PS00284)   
Domains : Interpro (EBI)Serpin_CS    Serpin_dom    Serpin_fam   
Domain families : Pfam (Sanger)Serpin (PF00079)   
Domain families : Pfam (NCBI)pfam00079   
Domain families : Smart (EMBL)SERPIN (SM00093)  
Conserved Domain (NCBI)SERPINA7
DMDM Disease mutations6906
Blocks (Seattle)SERPINA7
PDB (SRS)2CEO    2RIV    2RIW    2XN3    2XN5    2XN6    2XN7    4X30    4YIA   
PDB (PDBSum)2CEO    2RIV    2RIW    2XN3    2XN5    2XN6    2XN7    4X30    4YIA   
PDB (IMB)2CEO    2RIV    2RIW    2XN3    2XN5    2XN6    2XN7    4X30    4YIA   
PDB (RSDB)2CEO    2RIV    2RIW    2XN3    2XN5    2XN6    2XN7    4X30    4YIA   
Structural Biology KnowledgeBase2CEO    2RIV    2RIW    2XN3    2XN5    2XN6    2XN7    4X30    4YIA   
SCOP (Structural Classification of Proteins)2CEO    2RIV    2RIW    2XN3    2XN5    2XN6    2XN7    4X30    4YIA   
CATH (Classification of proteins structures)2CEO    2RIV    2RIW    2XN3    2XN5    2XN6    2XN7    4X30    4YIA   
SuperfamilyP05543
Human Protein AtlasENSG00000123561
Peptide AtlasP05543
HPRD02438
IPIIPI00292946   
Protein Interaction databases
DIP (DOE-UCLA)P05543
IntAct (EBI)P05543
FunCoupENSG00000123561
BioGRIDSERPINA7
STRING (EMBL)SERPINA7
ZODIACSERPINA7
Ontologies - Pathways
QuickGOP05543
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular region  extracellular space  negative regulation of endopeptidase activity  extracellular exosome  thyroid hormone transport  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular region  extracellular space  negative regulation of endopeptidase activity  extracellular exosome  thyroid hormone transport  
NDEx NetworkSERPINA7
Atlas of Cancer Signalling NetworkSERPINA7
Wikipedia pathwaysSERPINA7
Orthology - Evolution
OrthoDB6906
GeneTree (enSembl)ENSG00000123561
Phylogenetic Trees/Animal Genes : TreeFamSERPINA7
HOVERGENP05543
HOGENOMP05543
Homologs : HomoloGeneSERPINA7
Homology/Alignments : Family Browser (UCSC)SERPINA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERPINA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERPINA7
dbVarSERPINA7
ClinVarSERPINA7
1000_GenomesSERPINA7 
Exome Variant ServerSERPINA7
ExAC (Exome Aggregation Consortium)SERPINA7 (select the gene name)
Genetic variants : HAPMAP6906
Genomic Variants (DGV)SERPINA7 [DGVbeta]
DECIPHERSERPINA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERPINA7 
Mutations
ICGC Data PortalSERPINA7 
TCGA Data PortalSERPINA7 
Broad Tumor PortalSERPINA7
OASIS PortalSERPINA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERPINA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERPINA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SERPINA7
DgiDB (Drug Gene Interaction Database)SERPINA7
DoCM (Curated mutations)SERPINA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERPINA7 (select a term)
intoGenSERPINA7
Cancer3DSERPINA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300932    314200   
Orphanet
MedgenSERPINA7
Genetic Testing Registry SERPINA7
NextProtP05543 [Medical]
TSGene6906
GENETestsSERPINA7
Target ValidationSERPINA7
Huge Navigator SERPINA7 [HugePedia]
snp3D : Map Gene to Disease6906
BioCentury BCIQSERPINA7
ClinGenSERPINA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6906
Chemical/Pharm GKB GenePA36347
Clinical trialSERPINA7
Miscellaneous
canSAR (ICR)SERPINA7 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERPINA7
EVEXSERPINA7
GoPubMedSERPINA7
iHOPSERPINA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:27 CEST 2017

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