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SERPINB10 (serpin family B member 10)

Identity

Alias_namesbomapin)
PI10
Alias_symbol (synonym)bomapin
Other aliasPI-10
HGNC (Hugo) SERPINB10
LocusID (NCBI) 5273
Atlas_Id 56422
Location 18q22.1  [Link to chromosome band 18q22]
Location_base_pair Starts at 63907990 and ends at 63936111 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERPINB10   8942
Cards
Entrez_Gene (NCBI)SERPINB10  5273  serpin family B member 10
AliasesPI-10; PI10
GeneCards (Weizmann)SERPINB10
Ensembl hg19 (Hinxton)ENSG00000242550 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242550 [Gene_View]  chr18:63907990-63936111 [Contig_View]  SERPINB10 [Vega]
ICGC DataPortalENSG00000242550
TCGA cBioPortalSERPINB10
AceView (NCBI)SERPINB10
Genatlas (Paris)SERPINB10
WikiGenes5273
SOURCE (Princeton)SERPINB10
Genetics Home Reference (NIH)SERPINB10
Genomic and cartography
GoldenPath hg38 (UCSC)SERPINB10  -     chr18:63907990-63936111 +  18q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERPINB10  -     18q22.1   [Description]    (hg19-Feb_2009)
EnsemblSERPINB10 - 18q22.1 [CytoView hg19]  SERPINB10 - 18q22.1 [CytoView hg38]
Mapping of homologs : NCBISERPINB10 [Mapview hg19]  SERPINB10 [Mapview hg38]
OMIM602058   
Gene and transcription
Genbank (Entrez)AA993220 AK314936 BC096217 BC096218 BC096219
RefSeq transcript (Entrez)NM_005024
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERPINB10
Cluster EST : UnigeneHs.158339 [ NCBI ]
CGAP (NCI)Hs.158339
Alternative Splicing GalleryENSG00000242550
Gene ExpressionSERPINB10 [ NCBI-GEO ]   SERPINB10 [ EBI - ARRAY_EXPRESS ]   SERPINB10 [ SEEK ]   SERPINB10 [ MEM ]
Gene Expression Viewer (FireBrowse)SERPINB10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5273
GTEX Portal (Tissue expression)SERPINB10
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48595   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48595  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48595
Splice isoforms : SwissVarP48595
PhosPhoSitePlusP48595
Domaine pattern : Prosite (Expaxy)SERPIN (PS00284)   
Domains : Interpro (EBI)Serpin_CS    Serpin_dom    Serpin_fam   
Domain families : Pfam (Sanger)Serpin (PF00079)   
Domain families : Pfam (NCBI)pfam00079   
Domain families : Smart (EMBL)SERPIN (SM00093)  
Conserved Domain (NCBI)SERPINB10
DMDM Disease mutations5273
Blocks (Seattle)SERPINB10
SuperfamilyP48595
Human Protein AtlasENSG00000242550
Peptide AtlasP48595
HPRD03635
IPIIPI00010304   IPI00791734   IPI00792070   
Protein Interaction databases
DIP (DOE-UCLA)P48595
IntAct (EBI)P48595
FunCoupENSG00000242550
BioGRIDSERPINB10
STRING (EMBL)SERPINB10
ZODIACSERPINB10
Ontologies - Pathways
QuickGOP48595
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular space  nucleus  cytosol  plasma membrane  negative regulation of endopeptidase activity  secretory granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular space  nucleus  cytosol  plasma membrane  negative regulation of endopeptidase activity  secretory granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
Pathways : KEGGAmoebiasis   
NDEx NetworkSERPINB10
Atlas of Cancer Signalling NetworkSERPINB10
Wikipedia pathwaysSERPINB10
Orthology - Evolution
OrthoDB5273
GeneTree (enSembl)ENSG00000242550
Phylogenetic Trees/Animal Genes : TreeFamSERPINB10
HOVERGENP48595
HOGENOMP48595
Homologs : HomoloGeneSERPINB10
Homology/Alignments : Family Browser (UCSC)SERPINB10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERPINB10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERPINB10
dbVarSERPINB10
ClinVarSERPINB10
1000_GenomesSERPINB10 
Exome Variant ServerSERPINB10
ExAC (Exome Aggregation Consortium)SERPINB10 (select the gene name)
Genetic variants : HAPMAP5273
Genomic Variants (DGV)SERPINB10 [DGVbeta]
DECIPHERSERPINB10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERPINB10 
Mutations
ICGC Data PortalSERPINB10 
TCGA Data PortalSERPINB10 
Broad Tumor PortalSERPINB10
OASIS PortalSERPINB10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERPINB10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERPINB10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERPINB10
DgiDB (Drug Gene Interaction Database)SERPINB10
DoCM (Curated mutations)SERPINB10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERPINB10 (select a term)
intoGenSERPINB10
Cancer3DSERPINB10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602058   
Orphanet
MedgenSERPINB10
Genetic Testing Registry SERPINB10
NextProtP48595 [Medical]
TSGene5273
GENETestsSERPINB10
Target ValidationSERPINB10
Huge Navigator SERPINB10 [HugePedia]
snp3D : Map Gene to Disease5273
BioCentury BCIQSERPINB10
ClinGenSERPINB10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5273
Chemical/Pharm GKB GenePA35510
Clinical trialSERPINB10
Miscellaneous
canSAR (ICR)SERPINB10 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERPINB10
EVEXSERPINB10
GoPubMedSERPINB10
iHOPSERPINB10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:58 CEST 2017

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