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SERTAD1 (SERTA domain containing 1)

Identity

Alias_symbol (synonym)SEI1
TRIP-Br1
Other alias
HGNC (Hugo) SERTAD1
LocusID (NCBI) 29950
Atlas_Id 45880
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40422501 and ends at 40426025 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERTAD1   17932
Cards
Entrez_Gene (NCBI)SERTAD1  29950  SERTA domain containing 1
AliasesSEI1; TRIP-Br1
GeneCards (Weizmann)SERTAD1
Ensembl hg19 (Hinxton)ENSG00000197019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197019 [Gene_View]  chr19:40422501-40426025 [Contig_View]  SERTAD1 [Vega]
ICGC DataPortalENSG00000197019
TCGA cBioPortalSERTAD1
AceView (NCBI)SERTAD1
Genatlas (Paris)SERTAD1
WikiGenes29950
SOURCE (Princeton)SERTAD1
Genetics Home Reference (NIH)SERTAD1
Genomic and cartography
GoldenPath hg38 (UCSC)SERTAD1  -     chr19:40422501-40426025 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERTAD1  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblSERTAD1 - 19q13.2 [CytoView hg19]  SERTAD1 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBISERTAD1 [Mapview hg19]  SERTAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA928491 AF117959 AF366402 AK074652 AK222970
RefSeq transcript (Entrez)NM_013376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERTAD1
Cluster EST : UnigeneHs.269898 [ NCBI ]
CGAP (NCI)Hs.269898
Alternative Splicing GalleryENSG00000197019
Gene ExpressionSERTAD1 [ NCBI-GEO ]   SERTAD1 [ EBI - ARRAY_EXPRESS ]   SERTAD1 [ SEEK ]   SERTAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SERTAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29950
GTEX Portal (Tissue expression)SERTAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHV2
Splice isoforms : SwissVarQ9UHV2
PhosPhoSitePlusQ9UHV2
Domaine pattern : Prosite (Expaxy)SERTA (PS51053)   
Domains : Interpro (EBI)SERTA_dom   
Domain families : Pfam (Sanger)SERTA (PF06031)   
Domain families : Pfam (NCBI)pfam06031   
Conserved Domain (NCBI)SERTAD1
DMDM Disease mutations29950
Blocks (Seattle)SERTAD1
SuperfamilyQ9UHV2
Human Protein AtlasENSG00000197019
Peptide AtlasQ9UHV2
HPRD15326
IPIIPI00305990   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHV2
IntAct (EBI)Q9UHV2
FunCoupENSG00000197019
BioGRIDSERTAD1
STRING (EMBL)SERTAD1
ZODIACSERTAD1
Ontologies - Pathways
QuickGOQ9UHV2
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  nucleus  cytoplasm  transcription, DNA-templated  positive regulation of cell proliferation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  nucleus  cytoplasm  transcription, DNA-templated  positive regulation of cell proliferation  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkSERTAD1
Atlas of Cancer Signalling NetworkSERTAD1
Wikipedia pathwaysSERTAD1
Orthology - Evolution
OrthoDB29950
GeneTree (enSembl)ENSG00000197019
Phylogenetic Trees/Animal Genes : TreeFamSERTAD1
HOVERGENQ9UHV2
HOGENOMQ9UHV2
Homologs : HomoloGeneSERTAD1
Homology/Alignments : Family Browser (UCSC)SERTAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERTAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERTAD1
dbVarSERTAD1
ClinVarSERTAD1
1000_GenomesSERTAD1 
Exome Variant ServerSERTAD1
ExAC (Exome Aggregation Consortium)SERTAD1 (select the gene name)
Genetic variants : HAPMAP29950
Genomic Variants (DGV)SERTAD1 [DGVbeta]
DECIPHERSERTAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERTAD1 
Mutations
ICGC Data PortalSERTAD1 
TCGA Data PortalSERTAD1 
Broad Tumor PortalSERTAD1
OASIS PortalSERTAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERTAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERTAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERTAD1
DgiDB (Drug Gene Interaction Database)SERTAD1
DoCM (Curated mutations)SERTAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERTAD1 (select a term)
intoGenSERTAD1
Cancer3DSERTAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSERTAD1
Genetic Testing Registry SERTAD1
NextProtQ9UHV2 [Medical]
TSGene29950
GENETestsSERTAD1
Huge Navigator SERTAD1 [HugePedia]
snp3D : Map Gene to Disease29950
BioCentury BCIQSERTAD1
ClinGenSERTAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29950
Chemical/Pharm GKB GenePA134957023
Clinical trialSERTAD1
Miscellaneous
canSAR (ICR)SERTAD1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERTAD1
EVEXSERTAD1
GoPubMedSERTAD1
iHOPSERTAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:36:46 CEST 2017

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