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SERTAD3 (SERTA domain containing 3)

Identity

Alias_symbol (synonym)RBT1
Other alias
HGNC (Hugo) SERTAD3
LocusID (NCBI) 29946
Atlas_Id 42270
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40440841 and ends at 40442598 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERTAD3   17931
Cards
Entrez_Gene (NCBI)SERTAD3  29946  SERTA domain containing 3
AliasesRBT1
GeneCards (Weizmann)SERTAD3
Ensembl hg19 (Hinxton)ENSG00000167565 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167565 [Gene_View]  chr19:40440841-40442598 [Contig_View]  SERTAD3 [Vega]
ICGC DataPortalENSG00000167565
TCGA cBioPortalSERTAD3
AceView (NCBI)SERTAD3
Genatlas (Paris)SERTAD3
WikiGenes29946
SOURCE (Princeton)SERTAD3
Genetics Home Reference (NIH)SERTAD3
Genomic and cartography
GoldenPath hg38 (UCSC)SERTAD3  -     chr19:40440841-40442598 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERTAD3  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblSERTAD3 - 19q13.2 [CytoView hg19]  SERTAD3 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBISERTAD3 [Mapview hg19]  SERTAD3 [Mapview hg38]
OMIM612125   
Gene and transcription
Genbank (Entrez)AF192529 AK074604 AW242302 BC014061 BC050643
RefSeq transcript (Entrez)NM_013368 NM_203344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERTAD3
Cluster EST : UnigeneHs.515412 [ NCBI ]
CGAP (NCI)Hs.515412
Alternative Splicing GalleryENSG00000167565
Gene ExpressionSERTAD3 [ NCBI-GEO ]   SERTAD3 [ EBI - ARRAY_EXPRESS ]   SERTAD3 [ SEEK ]   SERTAD3 [ MEM ]
Gene Expression Viewer (FireBrowse)SERTAD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29946
GTEX Portal (Tissue expression)SERTAD3
Human Protein AtlasENSG00000167565-SERTAD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJW9
Splice isoforms : SwissVarQ9UJW9
PhosPhoSitePlusQ9UJW9
Domaine pattern : Prosite (Expaxy)SERTA (PS51053)   
Domains : Interpro (EBI)SERTA_dom   
Domain families : Pfam (Sanger)SERTA (PF06031)   
Domain families : Pfam (NCBI)pfam06031   
Conserved Domain (NCBI)SERTAD3
DMDM Disease mutations29946
Blocks (Seattle)SERTAD3
SuperfamilyQ9UJW9
Human Protein Atlas [tissue]ENSG00000167565-SERTAD3 [tissue]
Peptide AtlasQ9UJW9
HPRD15327
IPIIPI00073563   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJW9
IntAct (EBI)Q9UJW9
FunCoupENSG00000167565
BioGRIDSERTAD3
STRING (EMBL)SERTAD3
ZODIACSERTAD3
Ontologies - Pathways
QuickGOQ9UJW9
Ontology : AmiGOprotein binding  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of cell growth  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of cell growth  positive regulation of transcription, DNA-templated  
NDEx NetworkSERTAD3
Atlas of Cancer Signalling NetworkSERTAD3
Wikipedia pathwaysSERTAD3
Orthology - Evolution
OrthoDB29946
GeneTree (enSembl)ENSG00000167565
Phylogenetic Trees/Animal Genes : TreeFamSERTAD3
HOVERGENQ9UJW9
HOGENOMQ9UJW9
Homologs : HomoloGeneSERTAD3
Homology/Alignments : Family Browser (UCSC)SERTAD3
Gene fusions - Rearrangements
Tumor Fusion PortalSERTAD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERTAD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERTAD3
dbVarSERTAD3
ClinVarSERTAD3
1000_GenomesSERTAD3 
Exome Variant ServerSERTAD3
ExAC (Exome Aggregation Consortium)ENSG00000167565
GNOMAD BrowserENSG00000167565
Genetic variants : HAPMAP29946
Genomic Variants (DGV)SERTAD3 [DGVbeta]
DECIPHERSERTAD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERTAD3 
Mutations
ICGC Data PortalSERTAD3 
TCGA Data PortalSERTAD3 
Broad Tumor PortalSERTAD3
OASIS PortalSERTAD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERTAD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERTAD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERTAD3
DgiDB (Drug Gene Interaction Database)SERTAD3
DoCM (Curated mutations)SERTAD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERTAD3 (select a term)
intoGenSERTAD3
Cancer3DSERTAD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612125   
Orphanet
DisGeNETSERTAD3
MedgenSERTAD3
Genetic Testing Registry SERTAD3
NextProtQ9UJW9 [Medical]
TSGene29946
GENETestsSERTAD3
Target ValidationSERTAD3
Huge Navigator SERTAD3 [HugePedia]
snp3D : Map Gene to Disease29946
BioCentury BCIQSERTAD3
ClinGenSERTAD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29946
Chemical/Pharm GKB GenePA134941720
Clinical trialSERTAD3
Miscellaneous
canSAR (ICR)SERTAD3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERTAD3
EVEXSERTAD3
GoPubMedSERTAD3
iHOPSERTAD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:34:12 CET 2017

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