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SERTAD4-AS1 (SERTAD4 antisense RNA 1)

Identity

Alias_namesC1orf133
chromosome 1 open reading frame 133
SERTAD4 antisense RNA 1 (non-protein coding)
Other alias
HGNC (Hugo) SERTAD4-AS1
LocusID (NCBI) 574036
Atlas_Id 73152
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 210231459 and ends at 210234121 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERTAD4-AS1   32019
Cards
Entrez_Gene (NCBI)SERTAD4-AS1  574036  SERTAD4 antisense RNA 1
AliasesC1orf133
GeneCards (Weizmann)SERTAD4-AS1
Ensembl hg19 (Hinxton)ENSG00000203706 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203706 [Gene_View]  chr1:210231459-210234121 [Contig_View]  SERTAD4-AS1 [Vega]
ICGC DataPortalENSG00000203706
TCGA cBioPortalSERTAD4-AS1
AceView (NCBI)SERTAD4-AS1
Genatlas (Paris)SERTAD4-AS1
WikiGenes574036
SOURCE (Princeton)SERTAD4-AS1
Genetics Home Reference (NIH)SERTAD4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SERTAD4-AS1  -     chr1:210231459-210234121 -  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERTAD4-AS1  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblSERTAD4-AS1 - 1q32.2 [CytoView hg19]  SERTAD4-AS1 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBISERTAD4-AS1 [Mapview hg19]  SERTAD4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC066352 BC094794 BP422084
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERTAD4-AS1
Cluster EST : UnigeneHs.446946 [ NCBI ]
CGAP (NCI)Hs.446946
Alternative Splicing GalleryENSG00000203706
Gene ExpressionSERTAD4-AS1 [ NCBI-GEO ]   SERTAD4-AS1 [ EBI - ARRAY_EXPRESS ]   SERTAD4-AS1 [ SEEK ]   SERTAD4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SERTAD4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)574036
GTEX Portal (Tissue expression)SERTAD4-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TG53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TG53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TG53
Splice isoforms : SwissVarQ5TG53
PhosPhoSitePlusQ5TG53
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SERTAD4-AS1
DMDM Disease mutations574036
Blocks (Seattle)SERTAD4-AS1
SuperfamilyQ5TG53
Human Protein AtlasENSG00000203706
Peptide AtlasQ5TG53
IPIIPI00787296   IPI00787917   IPI00514975   
Protein Interaction databases
DIP (DOE-UCLA)Q5TG53
IntAct (EBI)Q5TG53
FunCoupENSG00000203706
BioGRIDSERTAD4-AS1
STRING (EMBL)SERTAD4-AS1
ZODIACSERTAD4-AS1
Ontologies - Pathways
QuickGOQ5TG53
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSERTAD4-AS1
Atlas of Cancer Signalling NetworkSERTAD4-AS1
Wikipedia pathwaysSERTAD4-AS1
Orthology - Evolution
OrthoDB574036
GeneTree (enSembl)ENSG00000203706
Phylogenetic Trees/Animal Genes : TreeFamSERTAD4-AS1
HOVERGENQ5TG53
HOGENOMQ5TG53
Homologs : HomoloGeneSERTAD4-AS1
Homology/Alignments : Family Browser (UCSC)SERTAD4-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERTAD4-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERTAD4-AS1
dbVarSERTAD4-AS1
ClinVarSERTAD4-AS1
1000_GenomesSERTAD4-AS1 
Exome Variant ServerSERTAD4-AS1
ExAC (Exome Aggregation Consortium)SERTAD4-AS1 (select the gene name)
Genetic variants : HAPMAP574036
Genomic Variants (DGV)SERTAD4-AS1 [DGVbeta]
DECIPHERSERTAD4-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERTAD4-AS1 
Mutations
ICGC Data PortalSERTAD4-AS1 
TCGA Data PortalSERTAD4-AS1 
Broad Tumor PortalSERTAD4-AS1
OASIS PortalSERTAD4-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSERTAD4-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERTAD4-AS1
DgiDB (Drug Gene Interaction Database)SERTAD4-AS1
DoCM (Curated mutations)SERTAD4-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERTAD4-AS1 (select a term)
intoGenSERTAD4-AS1
Cancer3DSERTAD4-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSERTAD4-AS1
Genetic Testing Registry SERTAD4-AS1
NextProtQ5TG53 [Medical]
TSGene574036
GENETestsSERTAD4-AS1
Target ValidationSERTAD4-AS1
Huge Navigator SERTAD4-AS1 [HugePedia]
snp3D : Map Gene to Disease574036
BioCentury BCIQSERTAD4-AS1
ClinGenSERTAD4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574036
Chemical/Pharm GKB GenePA142672451
Clinical trialSERTAD4-AS1
Miscellaneous
canSAR (ICR)SERTAD4-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERTAD4-AS1
EVEXSERTAD4-AS1
GoPubMedSERTAD4-AS1
iHOPSERTAD4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:37 CEST 2017

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