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SERTAD4 (SERTA domain containing 4)

Identity

Alias_symbol (synonym)DJ667H12.2
Other alias
HGNC (Hugo) SERTAD4
LocusID (NCBI) 56256
Atlas_Id 73151
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 210406195 and ends at 210416440 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADSS (1q44) / SERTAD4 (1q32.2)HHAT (1q32.2) / SERTAD4 (1q32.2)HHAT SERTAD4
ADSS SERTAD4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERTAD4   25236
Cards
Entrez_Gene (NCBI)SERTAD4  56256  SERTA domain containing 4
AliasesDJ667H12.2
GeneCards (Weizmann)SERTAD4
Ensembl hg19 (Hinxton) [Gene_View]  chr1:210406195-210416440 [Contig_View]  SERTAD4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:210406195-210416440 [Contig_View]  SERTAD4 [Vega]
TCGA cBioPortalSERTAD4
AceView (NCBI)SERTAD4
Genatlas (Paris)SERTAD4
WikiGenes56256
SOURCE (Princeton)SERTAD4
Genetics Home Reference (NIH)SERTAD4
Genomic and cartography
GoldenPath hg19 (UCSC)SERTAD4  -     chr1:210406195-210416440 +  1q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SERTAD4  -     1q32.2   [Description]    (hg38-Dec_2013)
EnsemblSERTAD4 - 1q32.2 [CytoView hg19]  SERTAD4 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBISERTAD4 [Mapview hg19]  SERTAD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096381 AK315386 BC012083 DQ893633 DQ895530
RefSeq transcript (Entrez)NM_019605
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294 NW_011332687
Consensus coding sequences : CCDS (NCBI)SERTAD4
Cluster EST : UnigeneHs.600545 [ NCBI ]
CGAP (NCI)Hs.600545
Gene ExpressionSERTAD4 [ NCBI-GEO ]   SERTAD4 [ EBI - ARRAY_EXPRESS ]   SERTAD4 [ SEEK ]   SERTAD4 [ MEM ]
Gene Expression Viewer (FireBrowse)SERTAD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56256
GTEX Portal (Tissue expression)SERTAD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUC0
Splice isoforms : SwissVarQ9NUC0
PhosPhoSitePlusQ9NUC0
Domaine pattern : Prosite (Expaxy)SERTA (PS51053)   
Domains : Interpro (EBI)SERTA_dom    SERTAD4   
Domain families : Pfam (Sanger)SERTA (PF06031)   
Domain families : Pfam (NCBI)pfam06031   
Conserved Domain (NCBI)SERTAD4
DMDM Disease mutations56256
Blocks (Seattle)SERTAD4
SuperfamilyQ9NUC0
Peptide AtlasQ9NUC0
HPRD15328
IPIIPI00021319   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUC0
IntAct (EBI)Q9NUC0
BioGRIDSERTAD4
STRING (EMBL)SERTAD4
ZODIACSERTAD4
Ontologies - Pathways
QuickGOQ9NUC0
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkSERTAD4
Atlas of Cancer Signalling NetworkSERTAD4
Wikipedia pathwaysSERTAD4
Orthology - Evolution
OrthoDB56256
Phylogenetic Trees/Animal Genes : TreeFamSERTAD4
HOVERGENQ9NUC0
HOGENOMQ9NUC0
Homologs : HomoloGeneSERTAD4
Homology/Alignments : Family Browser (UCSC)SERTAD4
Gene fusions - Rearrangements
Fusion: TCGAHHAT SERTAD4
Fusion: TCGAADSS SERTAD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERTAD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERTAD4
dbVarSERTAD4
ClinVarSERTAD4
1000_GenomesSERTAD4 
Exome Variant ServerSERTAD4
ExAC (Exome Aggregation Consortium)SERTAD4 (select the gene name)
Genetic variants : HAPMAP56256
Genomic Variants (DGV)SERTAD4 [DGVbeta]
DECIPHER (Syndromes)1:210406195-210416440  
CONAN: Copy Number AnalysisSERTAD4 
Mutations
ICGC Data PortalSERTAD4 
TCGA Data PortalSERTAD4 
Broad Tumor PortalSERTAD4
OASIS PortalSERTAD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSERTAD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSERTAD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERTAD4
DgiDB (Drug Gene Interaction Database)SERTAD4
DoCM (Curated mutations)SERTAD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERTAD4 (select a term)
intoGenSERTAD4
Cancer3DSERTAD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSERTAD4
Genetic Testing Registry SERTAD4
NextProtQ9NUC0 [Medical]
TSGene56256
GENETestsSERTAD4
Huge Navigator SERTAD4 [HugePedia]
snp3D : Map Gene to Disease56256
BioCentury BCIQSERTAD4
ClinGenSERTAD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56256
Chemical/Pharm GKB GenePA134897438
Clinical trialSERTAD4
Miscellaneous
canSAR (ICR)SERTAD4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERTAD4
EVEXSERTAD4
GoPubMedSERTAD4
iHOPSERTAD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:54 CET 2017

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