Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SERTM1 (serine rich and transmembrane domain containing 1)

Identity

Alias_namesC13orf36
chromosome 13 open reading frame 36
serine-rich and transmembrane domain containing 1
Other alias
HGNC (Hugo) SERTM1
LocusID (NCBI) 400120
Atlas_Id 73153
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 36673912 and ends at 36697838 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SERTM1   33792
Cards
Entrez_Gene (NCBI)SERTM1  400120  serine rich and transmembrane domain containing 1
AliasesC13orf36
GeneCards (Weizmann)SERTM1
Ensembl hg19 (Hinxton)ENSG00000180440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180440 [Gene_View]  chr13:36673912-36697838 [Contig_View]  SERTM1 [Vega]
ICGC DataPortalENSG00000180440
TCGA cBioPortalSERTM1
AceView (NCBI)SERTM1
Genatlas (Paris)SERTM1
WikiGenes400120
SOURCE (Princeton)SERTM1
Genetics Home Reference (NIH)SERTM1
Genomic and cartography
GoldenPath hg38 (UCSC)SERTM1  -     chr13:36673912-36697838 +  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERTM1  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblSERTM1 - 13q13.3 [CytoView hg19]  SERTM1 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBISERTM1 [Mapview hg19]  SERTM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294236 BC036540 BI544475 CA392022 DC425828
RefSeq transcript (Entrez)NM_203451
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERTM1
Cluster EST : UnigeneHs.422375 [ NCBI ]
CGAP (NCI)Hs.422375
Alternative Splicing GalleryENSG00000180440
Gene ExpressionSERTM1 [ NCBI-GEO ]   SERTM1 [ EBI - ARRAY_EXPRESS ]   SERTM1 [ SEEK ]   SERTM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SERTM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400120
GTEX Portal (Tissue expression)SERTM1
Human Protein AtlasENSG00000180440-SERTM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2A2V5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2A2V5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2A2V5
Splice isoforms : SwissVarA2A2V5
PhosPhoSitePlusA2A2V5
Domains : Interpro (EBI)SRTM1   
Domain families : Pfam (Sanger)SRTM1 (PF15872)   
Domain families : Pfam (NCBI)pfam15872   
Conserved Domain (NCBI)SERTM1
DMDM Disease mutations400120
Blocks (Seattle)SERTM1
SuperfamilyA2A2V5
Human Protein Atlas [tissue]ENSG00000180440-SERTM1 [tissue]
Peptide AtlasA2A2V5
HPRD14219
IPIIPI00296579   
Protein Interaction databases
DIP (DOE-UCLA)A2A2V5
IntAct (EBI)A2A2V5
FunCoupENSG00000180440
BioGRIDSERTM1
STRING (EMBL)SERTM1
ZODIACSERTM1
Ontologies - Pathways
QuickGOA2A2V5
Ontology : AmiGOintegral component of membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIintegral component of membrane  intracellular membrane-bounded organelle  
NDEx NetworkSERTM1
Atlas of Cancer Signalling NetworkSERTM1
Wikipedia pathwaysSERTM1
Orthology - Evolution
OrthoDB400120
GeneTree (enSembl)ENSG00000180440
Phylogenetic Trees/Animal Genes : TreeFamSERTM1
HOVERGENA2A2V5
HOGENOMA2A2V5
Homologs : HomoloGeneSERTM1
Homology/Alignments : Family Browser (UCSC)SERTM1
Gene fusions - Rearrangements
Tumor Fusion PortalSERTM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSERTM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SERTM1
dbVarSERTM1
ClinVarSERTM1
1000_GenomesSERTM1 
Exome Variant ServerSERTM1
ExAC (Exome Aggregation Consortium)ENSG00000180440
GNOMAD BrowserENSG00000180440
Genetic variants : HAPMAP400120
Genomic Variants (DGV)SERTM1 [DGVbeta]
DECIPHERSERTM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSERTM1 
Mutations
ICGC Data PortalSERTM1 
TCGA Data PortalSERTM1 
Broad Tumor PortalSERTM1
OASIS PortalSERTM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSERTM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SERTM1
DgiDB (Drug Gene Interaction Database)SERTM1
DoCM (Curated mutations)SERTM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SERTM1 (select a term)
intoGenSERTM1
Cancer3DSERTM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSERTM1
MedgenSERTM1
Genetic Testing Registry SERTM1
NextProtA2A2V5 [Medical]
TSGene400120
GENETestsSERTM1
Target ValidationSERTM1
Huge Navigator SERTM1 [HugePedia]
snp3D : Map Gene to Disease400120
BioCentury BCIQSERTM1
ClinGenSERTM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400120
Chemical/Pharm GKB GenePA162378085
Clinical trialSERTM1
Miscellaneous
canSAR (ICR)SERTM1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERTM1
EVEXSERTM1
GoPubMedSERTM1
iHOPSERTM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:55 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.