Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SERTM2 (serine rich and transmembrane domain containing 2)

Identity

Alias (NCBI)DKFZp686D0853
LINC00890
HGNC (Hugo) SERTM2
LocusID (NCBI) 401613
Atlas_Id 80304
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 111511662 and ends at 111522399 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)SERTM2   48576
Cards
Entrez_Gene (NCBI)SERTM2    serine rich and transmembrane domain containing 2
AliasesDKFZp686D0853; LINC00890
GeneCards (Weizmann)SERTM2
Ensembl hg19 (Hinxton)ENSG00000260802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260802 [Gene_View]  ENSG00000260802 [Sequence]  chrX:111511662-111522399 [Contig_View]  SERTM2 [Vega]
ICGC DataPortalENSG00000260802
TCGA cBioPortalSERTM2
AceView (NCBI)SERTM2
Genatlas (Paris)SERTM2
SOURCE (Princeton)SERTM2
Genetics Home Reference (NIH)SERTM2
Genomic and cartography
GoldenPath hg38 (UCSC)SERTM2  -     chrX:111511662-111522399 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERTM2  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathSERTM2 - Xq23 [CytoView hg19]  SERTM2 - Xq23 [CytoView hg38]
ImmunoBaseENSG00000260802
genome Data Viewer NCBISERTM2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA429445 BX537697 BY994992 DR005240
RefSeq transcript (Entrez)NM_001354473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERTM2
Alternative Splicing GalleryENSG00000260802
Gene ExpressionSERTM2 [ NCBI-GEO ]   SERTM2 [ EBI - ARRAY_EXPRESS ]   SERTM2 [ SEEK ]   SERTM2 [ MEM ]
Gene Expression Viewer (FireBrowse)SERTM2 [ Firebrowse - Broad ]
GenevisibleExpression of SERTM2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401613
GTEX Portal (Tissue expression)SERTM2
Human Protein AtlasENSG00000260802-SERTM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SERTM2
Blocks (Seattle)SERTM2
Human Protein Atlas [tissue]ENSG00000260802-SERTM2 [tissue]
IPIIPI00783957   
Protein Interaction databases
BioGRIDSERTM2
STRING (EMBL)SERTM2
ZODIACSERTM2
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERTM2
EVEXSERTM2
GoPubMedSERTM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:26:32 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.