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SESTD1 (SEC14 and spectrin domain containing 1)

Identity

Alias_namesSEC14 and spectrin domains 1
Alias_symbol (synonym)DKFZp434O0515
Solo
Other aliasSOLO
HGNC (Hugo) SESTD1
LocusID (NCBI) 91404
Atlas_Id 43488
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 179101692 and ends at 179264623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID1B (6q25.3) / SESTD1 (2q31.2)SESTD1 (2q31.2) / ACMSD (2q21.3)SESTD1 (2q31.2) / SESTD1 (2q31.2)
SESTD1 (2q31.2) / ZNF385B (2q31.2)SESTD1 2q31.2 / ACMSD 2q21.3SESTD1 2q31.2 / ZNF385B 2q31.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SESTD1   18379
Cards
Entrez_Gene (NCBI)SESTD1  91404  SEC14 and spectrin domain containing 1
AliasesSOLO
GeneCards (Weizmann)SESTD1
Ensembl hg19 (Hinxton)ENSG00000187231 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187231 [Gene_View]  chr2:179101692-179264623 [Contig_View]  SESTD1 [Vega]
ICGC DataPortalENSG00000187231
TCGA cBioPortalSESTD1
AceView (NCBI)SESTD1
Genatlas (Paris)SESTD1
WikiGenes91404
SOURCE (Princeton)SESTD1
Genetics Home Reference (NIH)SESTD1
Genomic and cartography
GoldenPath hg38 (UCSC)SESTD1  -     chr2:179101692-179264623 -  2q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SESTD1  -     2q31.2   [Description]    (hg19-Feb_2009)
EnsemblSESTD1 - 2q31.2 [CytoView hg19]  SESTD1 - 2q31.2 [CytoView hg38]
Mapping of homologs : NCBISESTD1 [Mapview hg19]  SESTD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056075 AK057944 AK096232 AL122046 AY209190
RefSeq transcript (Entrez)NM_178123
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SESTD1
Cluster EST : UnigeneHs.30977 [ NCBI ]
CGAP (NCI)Hs.30977
Alternative Splicing GalleryENSG00000187231
Gene ExpressionSESTD1 [ NCBI-GEO ]   SESTD1 [ EBI - ARRAY_EXPRESS ]   SESTD1 [ SEEK ]   SESTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SESTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91404
GTEX Portal (Tissue expression)SESTD1
Human Protein AtlasENSG00000187231-SESTD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VW0
Splice isoforms : SwissVarQ86VW0
PhosPhoSitePlusQ86VW0
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)   
Domains : Interpro (EBI)CRAL-TRIO_dom   
Domain families : Pfam (Sanger)CRAL_TRIO_2 (PF13716)   
Domain families : Pfam (NCBI)pfam13716   
Conserved Domain (NCBI)SESTD1
DMDM Disease mutations91404
Blocks (Seattle)SESTD1
SuperfamilyQ86VW0
Human Protein Atlas [tissue]ENSG00000187231-SESTD1 [tissue]
Peptide AtlasQ86VW0
HPRD11549
IPIIPI00329002   IPI00916002   IPI00383819   IPI00916825   IPI00916158   IPI00916113   IPI00916526   
Protein Interaction databases
DIP (DOE-UCLA)Q86VW0
IntAct (EBI)Q86VW0
FunCoupENSG00000187231
BioGRIDSESTD1
STRING (EMBL)SESTD1
ZODIACSESTD1
Ontologies - Pathways
QuickGOQ86VW0
Ontology : AmiGOphosphatidylserine binding  protein binding  1-phosphatidylinositol binding  phosphatidylinositol-4,5-bisphosphate binding  phosphatidylinositol-5-phosphate binding  phosphatidylcholine binding  phosphatidylinositol-3-phosphate binding  calcium channel complex  phosphatidylinositol-3,4-bisphosphate binding  phosphatidylinositol-4-phosphate binding  phosphatidic acid binding  phosphatidylinositol-3,5-bisphosphate binding  negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel  
Ontology : EGO-EBIphosphatidylserine binding  protein binding  1-phosphatidylinositol binding  phosphatidylinositol-4,5-bisphosphate binding  phosphatidylinositol-5-phosphate binding  phosphatidylcholine binding  phosphatidylinositol-3-phosphate binding  calcium channel complex  phosphatidylinositol-3,4-bisphosphate binding  phosphatidylinositol-4-phosphate binding  phosphatidic acid binding  phosphatidylinositol-3,5-bisphosphate binding  negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel  
NDEx NetworkSESTD1
Atlas of Cancer Signalling NetworkSESTD1
Wikipedia pathwaysSESTD1
Orthology - Evolution
OrthoDB91404
GeneTree (enSembl)ENSG00000187231
Phylogenetic Trees/Animal Genes : TreeFamSESTD1
HOVERGENQ86VW0
HOGENOMQ86VW0
Homologs : HomoloGeneSESTD1
Homology/Alignments : Family Browser (UCSC)SESTD1
Gene fusions - Rearrangements
Fusion : MitelmanSESTD1/ACMSD [2q31.2/2q21.3]  
Fusion : MitelmanSESTD1/ZNF385B [2q31.2/2q31.2]  [t(2;2)(q31;q31)]  
Fusion: TCGA_MDACCSESTD1 2q31.2 ACMSD 2q21.3 BRCA
Fusion: TCGA_MDACCSESTD1 2q31.2 ZNF385B 2q31.2 BRCA
Tumor Fusion PortalSESTD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSESTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SESTD1
dbVarSESTD1
ClinVarSESTD1
1000_GenomesSESTD1 
Exome Variant ServerSESTD1
ExAC (Exome Aggregation Consortium)ENSG00000187231
GNOMAD BrowserENSG00000187231
Genetic variants : HAPMAP91404
Genomic Variants (DGV)SESTD1 [DGVbeta]
DECIPHERSESTD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSESTD1 
Mutations
ICGC Data PortalSESTD1 
TCGA Data PortalSESTD1 
Broad Tumor PortalSESTD1
OASIS PortalSESTD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSESTD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSESTD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SESTD1
DgiDB (Drug Gene Interaction Database)SESTD1
DoCM (Curated mutations)SESTD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SESTD1 (select a term)
intoGenSESTD1
Cancer3DSESTD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSESTD1
MedgenSESTD1
Genetic Testing Registry SESTD1
NextProtQ86VW0 [Medical]
TSGene91404
GENETestsSESTD1
Target ValidationSESTD1
Huge Navigator SESTD1 [HugePedia]
snp3D : Map Gene to Disease91404
BioCentury BCIQSESTD1
ClinGenSESTD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91404
Chemical/Pharm GKB GenePA38534
Clinical trialSESTD1
Miscellaneous
canSAR (ICR)SESTD1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSESTD1
EVEXSESTD1
GoPubMedSESTD1
iHOPSESTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:34:12 CET 2017

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