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SETD5 (SET domain containing 5)

Identity

Alias_symbol (synonym)FLJ10707
Other alias-
HGNC (Hugo) SETD5
LocusID (NCBI) 55209
Atlas_Id 73156
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9439384 and ends at 9519838 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLIP4 (2p23.2) / SETD5 (3p25.3)HPS5 (11p15.1) / SETD5 (3p25.3)IKZF1 (7p12.2) / SETD5 (3p25.3)
ITPR3 (6p21.31) / SETD5 (3p25.3)SETD5 (3p25.3) / ATG7 (3p25.3)SETD5 (3p25.3) / IKZF1 (7p12.2)
SETD5 (3p25.3) / MED24 (17q21.1)SETD5 (3p25.3) / NAALAD2 (11q14.3)SETD5 (3p25.3) / SETD5 (3p25.3)
SETD5 (3p25.3) / TAOK1 (17q11.2)TATDN2 (3p25.3) / SETD5 (3p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SETD5   25566
Cards
Entrez_Gene (NCBI)SETD5  55209  SET domain containing 5
Aliases
GeneCards (Weizmann)SETD5
Ensembl hg19 (Hinxton)ENSG00000168137 [Gene_View]  chr3:9439384-9519838 [Contig_View]  SETD5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168137 [Gene_View]  chr3:9439384-9519838 [Contig_View]  SETD5 [Vega]
ICGC DataPortalENSG00000168137
TCGA cBioPortalSETD5
AceView (NCBI)SETD5
Genatlas (Paris)SETD5
WikiGenes55209
SOURCE (Princeton)SETD5
Genetics Home Reference (NIH)SETD5
Genomic and cartography
GoldenPath hg19 (UCSC)SETD5  -     chr3:9439384-9519838 +  3p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SETD5  -     3p25.3   [Description]    (hg38-Dec_2013)
EnsemblSETD5 - 3p25.3 [CytoView hg19]  SETD5 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBISETD5 [Mapview hg19]  SETD5 [Mapview hg38]
OMIM615743   615761   
Gene and transcription
Genbank (Entrez)AB051544 AI243838 AK001569 AK024384 AK025478
RefSeq transcript (Entrez)NM_001080517 NM_001292043 NM_018187
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_034132 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)SETD5
Cluster EST : UnigeneHs.288164 [ NCBI ]
CGAP (NCI)Hs.288164
Alternative Splicing GalleryENSG00000168137
Gene ExpressionSETD5 [ NCBI-GEO ]   SETD5 [ EBI - ARRAY_EXPRESS ]   SETD5 [ SEEK ]   SETD5 [ MEM ]
Gene Expression Viewer (FireBrowse)SETD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55209
GTEX Portal (Tissue expression)SETD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0A6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0A6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0A6
Splice isoforms : SwissVarQ9C0A6
PhosPhoSitePlusQ9C0A6
Domaine pattern : Prosite (Expaxy)SET (PS50280)   
Domains : Interpro (EBI)SET_dom   
Domain families : Pfam (Sanger)SET (PF00856)   
Domain families : Pfam (NCBI)pfam00856   
Domain families : Smart (EMBL)SET (SM00317)  
Conserved Domain (NCBI)SETD5
DMDM Disease mutations55209
Blocks (Seattle)SETD5
SuperfamilyQ9C0A6
Human Protein AtlasENSG00000168137
Peptide AtlasQ9C0A6
IPIIPI00742172   IPI00741171   IPI00926415   IPI00880023   IPI00879403   IPI00741882   IPI00927489   IPI00926870   IPI00926206   IPI00925541   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0A6
IntAct (EBI)Q9C0A6
FunCoupENSG00000168137
BioGRIDSETD5
STRING (EMBL)SETD5
ZODIACSETD5
Ontologies - Pathways
QuickGOQ9C0A6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkSETD5
Atlas of Cancer Signalling NetworkSETD5
Wikipedia pathwaysSETD5
Orthology - Evolution
OrthoDB55209
GeneTree (enSembl)ENSG00000168137
Phylogenetic Trees/Animal Genes : TreeFamSETD5
HOVERGENQ9C0A6
HOGENOMQ9C0A6
Homologs : HomoloGeneSETD5
Homology/Alignments : Family Browser (UCSC)SETD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSETD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SETD5
dbVarSETD5
ClinVarSETD5
1000_GenomesSETD5 
Exome Variant ServerSETD5
ExAC (Exome Aggregation Consortium)SETD5 (select the gene name)
Genetic variants : HAPMAP55209
Genomic Variants (DGV)SETD5 [DGVbeta]
DECIPHER (Syndromes)3:9439384-9519838  ENSG00000168137
CONAN: Copy Number AnalysisSETD5 
Mutations
ICGC Data PortalSETD5 
TCGA Data PortalSETD5 
Broad Tumor PortalSETD5
OASIS PortalSETD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSETD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSETD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SETD5
DgiDB (Drug Gene Interaction Database)SETD5
DoCM (Curated mutations)SETD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SETD5 (select a term)
intoGenSETD5
Cancer3DSETD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615743    615761   
Orphanet22919   
MedgenSETD5
Genetic Testing Registry SETD5
NextProtQ9C0A6 [Medical]
TSGene55209
GENETestsSETD5
Huge Navigator SETD5 [HugePedia]
snp3D : Map Gene to Disease55209
BioCentury BCIQSETD5
ClinGenSETD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55209
Chemical/Pharm GKB GenePA143485613
Clinical trialSETD5
Miscellaneous
canSAR (ICR)SETD5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSETD5
EVEXSETD5
GoPubMedSETD5
iHOPSETD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:55 CET 2017

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