Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SETD9 (SET domain containing 9)

Identity

Alias (NCBI)C5orf35
HGNC (Hugo) SETD9
HGNC Alias symbMGC33648
HGNC Previous nameC5orf35
HGNC Previous namechromosome 5 open reading frame 35
LocusID (NCBI) 133383
Atlas_Id 57102
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 56909596 and ends at 56917347 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SETD9   28508
Cards
Entrez_Gene (NCBI)SETD9  133383  SET domain containing 9
AliasesC5orf35
GeneCards (Weizmann)SETD9
Ensembl hg19 (Hinxton)ENSG00000155542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155542 [Gene_View]  ENSG00000155542 [Sequence]  chr5:56909596-56917347 [Contig_View]  SETD9 [Vega]
ICGC DataPortalENSG00000155542
TCGA cBioPortalSETD9
AceView (NCBI)SETD9
Genatlas (Paris)SETD9
WikiGenes133383
SOURCE (Princeton)SETD9
Genetics Home Reference (NIH)SETD9
Genomic and cartography
GoldenPath hg38 (UCSC)SETD9  -     chr5:56909596-56917347 +  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SETD9  -     5q11.2   [Description]    (hg19-Feb_2009)
GoldenPathSETD9 - 5q11.2 [CytoView hg19]  SETD9 - 5q11.2 [CytoView hg38]
ImmunoBaseENSG00000155542
genome Data Viewer NCBISETD9 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK309152 BC036528 BG719045
RefSeq transcript (Entrez)NM_001171990 NM_001323018 NM_001323019 NM_001323020 NM_001323022 NM_153706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SETD9
Alternative Splicing GalleryENSG00000155542
Gene ExpressionSETD9 [ NCBI-GEO ]   SETD9 [ EBI - ARRAY_EXPRESS ]   SETD9 [ SEEK ]   SETD9 [ MEM ]
Gene Expression Viewer (FireBrowse)SETD9 [ Firebrowse - Broad ]
GenevisibleExpression of SETD9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133383
GTEX Portal (Tissue expression)SETD9
Human Protein AtlasENSG00000155542-SETD9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE22
Splice isoforms : SwissVarQ8NE22
PhosPhoSitePlusQ8NE22
Domaine pattern : Prosite (Expaxy)SET (PS50280)   
Domains : Interpro (EBI)SET_dom    SETD9   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SETD9
DMDM Disease mutations133383
Blocks (Seattle)SETD9
SuperfamilyQ8NE22
Human Protein Atlas [tissue]ENSG00000155542-SETD9 [tissue]
Peptide AtlasQ8NE22
IPIIPI00168581   IPI00956031   IPI00852813   IPI00893154   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE22
IntAct (EBI)Q8NE22
FunCoupENSG00000155542
BioGRIDSETD9
STRING (EMBL)SETD9
ZODIACSETD9
Ontologies - Pathways
QuickGOQ8NE22
Ontology : AmiGOnucleoplasm  lysine N-methyltransferase activity  methylation  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBInucleoplasm  lysine N-methyltransferase activity  methylation  regulation of signal transduction by p53 class mediator  
NDEx NetworkSETD9
Atlas of Cancer Signalling NetworkSETD9
Wikipedia pathwaysSETD9
Orthology - Evolution
OrthoDB133383
GeneTree (enSembl)ENSG00000155542
Phylogenetic Trees/Animal Genes : TreeFamSETD9
HOGENOMQ8NE22
Homologs : HomoloGeneSETD9
Homology/Alignments : Family Browser (UCSC)SETD9
Gene fusions - Rearrangements
Fusion : QuiverSETD9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSETD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SETD9
dbVarSETD9
ClinVarSETD9
MonarchSETD9
1000_GenomesSETD9 
Exome Variant ServerSETD9
GNOMAD BrowserENSG00000155542
Varsome BrowserSETD9
Genetic variants : HAPMAP133383
Genomic Variants (DGV)SETD9 [DGVbeta]
DECIPHERSETD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSETD9 
Mutations
ICGC Data PortalSETD9 
TCGA Data PortalSETD9 
Broad Tumor PortalSETD9
OASIS PortalSETD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSETD9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSETD9
Mutations and Diseases : HGMDSETD9
BioMutasearch SETD9
DgiDB (Drug Gene Interaction Database)SETD9
DoCM (Curated mutations)SETD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SETD9 (select a term)
intoGenSETD9
Cancer3DSETD9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSETD9
MedgenSETD9
Genetic Testing Registry SETD9
NextProtQ8NE22 [Medical]
TSGene133383
GENETestsSETD9
Target ValidationSETD9
Huge Navigator SETD9 [HugePedia]
snp3D : Map Gene to Disease133383
BioCentury BCIQSETD9
ClinGenSETD9
Clinical trials, drugs, therapy
Protein Interactions : CTD133383
Pharm GKB GenePA162380099
Clinical trialSETD9
Miscellaneous
canSAR (ICR)SETD9 (select the gene name)
HarmonizomeSETD9
DataMed IndexSETD9
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSETD9
EVEXSETD9
GoPubMedSETD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 14 14:32:05 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.