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SETSIP (SET like protein)

Identity

Alias_namesSETP18
SET pseudogene 18
Other alias
HGNC (Hugo) SETSIP
LocusID (NCBI) 646817
Atlas_Id 51984
Location 1p22.1  [Link to chromosome band 1p22]
Location_base_pair Starts at 92074436 and ends at 92075472 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SETSIP   42937
Cards
Entrez_Gene (NCBI)SETSIP  646817  SET like protein
AliasesSETP18
GeneCards (Weizmann)SETSIP
Ensembl hg19 (Hinxton)ENSG00000230667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230667 [Gene_View]  ENSG00000230667 [Sequence]  chr1:92074436-92075472 [Contig_View]  SETSIP [Vega]
ICGC DataPortalENSG00000230667
TCGA cBioPortalSETSIP
AceView (NCBI)SETSIP
Genatlas (Paris)SETSIP
WikiGenes646817
SOURCE (Princeton)SETSIP
Genetics Home Reference (NIH)SETSIP
Genomic and cartography
GoldenPath hg38 (UCSC)SETSIP  -     chr1:92074436-92075472 -  1p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SETSIP  -     1p22.1   [Description]    (hg19-Feb_2009)
GoldenPathSETSIP - 1p22.1 [CytoView hg19]  SETSIP - 1p22.1 [CytoView hg38]
ImmunoBaseENSG00000230667
Mapping of homologs : NCBISETSIP [Mapview hg19]  SETSIP [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001287737
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SETSIP
Alternative Splicing GalleryENSG00000230667
Gene ExpressionSETSIP [ NCBI-GEO ]   SETSIP [ EBI - ARRAY_EXPRESS ]   SETSIP [ SEEK ]   SETSIP [ MEM ]
Gene Expression Viewer (FireBrowse)SETSIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646817
GTEX Portal (Tissue expression)SETSIP
Human Protein AtlasENSG00000230667-SETSIP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DME0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DME0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DME0
Splice isoforms : SwissVarP0DME0
PhosPhoSitePlusP0DME0
Domains : Interpro (EBI)NAP-like_sf    NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)SETSIP
DMDM Disease mutations646817
Blocks (Seattle)SETSIP
SuperfamilyP0DME0
Human Protein Atlas [tissue]ENSG00000230667-SETSIP [tissue]
Peptide AtlasP0DME0
Protein Interaction databases
DIP (DOE-UCLA)P0DME0
IntAct (EBI)P0DME0
FunCoupENSG00000230667
BioGRIDSETSIP
STRING (EMBL)SETSIP
ZODIACSETSIP
Ontologies - Pathways
QuickGOP0DME0
Ontology : AmiGOchromatin binding  nucleus  nucleoplasm  cytoplasm  lipid droplet  nucleosome assembly  endothelial cell differentiation  positive regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIchromatin binding  nucleus  nucleoplasm  cytoplasm  lipid droplet  nucleosome assembly  endothelial cell differentiation  positive regulation of transcription by RNA polymerase II  
NDEx NetworkSETSIP
Atlas of Cancer Signalling NetworkSETSIP
Wikipedia pathwaysSETSIP
Orthology - Evolution
OrthoDB646817
GeneTree (enSembl)ENSG00000230667
Phylogenetic Trees/Animal Genes : TreeFamSETSIP
HOGENOMP0DME0
Homologs : HomoloGeneSETSIP
Homology/Alignments : Family Browser (UCSC)SETSIP
Gene fusions - Rearrangements
Fusion : QuiverSETSIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSETSIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SETSIP
dbVarSETSIP
ClinVarSETSIP
1000_GenomesSETSIP 
Exome Variant ServerSETSIP
ExAC (Exome Aggregation Consortium)ENSG00000230667
GNOMAD BrowserENSG00000230667
Varsome BrowserSETSIP
Genetic variants : HAPMAP646817
Genomic Variants (DGV)SETSIP [DGVbeta]
DECIPHERSETSIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSETSIP 
Mutations
ICGC Data PortalSETSIP 
TCGA Data PortalSETSIP 
Broad Tumor PortalSETSIP
OASIS PortalSETSIP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSETSIP
BioMutasearch SETSIP
DgiDB (Drug Gene Interaction Database)SETSIP
DoCM (Curated mutations)SETSIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SETSIP (select a term)
intoGenSETSIP
Cancer3DSETSIP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSETSIP
MedgenSETSIP
Genetic Testing Registry SETSIP
NextProtP0DME0 [Medical]
TSGene646817
GENETestsSETSIP
Target ValidationSETSIP
Huge Navigator SETSIP [HugePedia]
snp3D : Map Gene to Disease646817
BioCentury BCIQSETSIP
ClinGenSETSIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646817
Chemical/Pharm GKB GenePA166123735
Clinical trialSETSIP
Miscellaneous
canSAR (ICR)SETSIP (select the gene name)
DataMed IndexSETSIP
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSETSIP
EVEXSETSIP
GoPubMedSETSIP
iHOPSETSIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:28:22 CEST 2019

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