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SFR1 (SWI5 dependent homologous recombination repair protein 1)

Identity

Alias_namesC10orf78
MEIR5
chromosome 10 open reading frame 78
MEI5 recombination repair protein homolog (S. cerevisiae)
SWI5-dependent recombination repair 1
SWI5-dependent homologous recombination repair protein 1
Alias_symbol (synonym)MEI5
bA373N18.1
FLJ41960
Other alias
HGNC (Hugo) SFR1
LocusID (NCBI) 119392
Atlas_Id 43595
Location 10q25.1  [Link to chromosome band 10q25]
Location_base_pair Starts at 105881929 and ends at 105886143 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFR1   29574
Cards
Entrez_Gene (NCBI)SFR1  119392  SWI5 dependent homologous recombination repair protein 1
AliasesC10orf78; MEI5; MEIR5; bA373N18.1
GeneCards (Weizmann)SFR1
Ensembl hg19 (Hinxton)ENSG00000156384 [Gene_View]  chr10:105881929-105886143 [Contig_View]  SFR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156384 [Gene_View]  chr10:105881929-105886143 [Contig_View]  SFR1 [Vega]
ICGC DataPortalENSG00000156384
TCGA cBioPortalSFR1
AceView (NCBI)SFR1
Genatlas (Paris)SFR1
WikiGenes119392
SOURCE (Princeton)SFR1
Genetics Home Reference (NIH)SFR1
Genomic and cartography
GoldenPath hg19 (UCSC)SFR1  -     chr10:105881929-105886143 +  10q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SFR1  -     10q25.1   [Description]    (hg38-Dec_2013)
EnsemblSFR1 - 10q25.1 [CytoView hg19]  SFR1 - 10q25.1 [CytoView hg38]
Mapping of homologs : NCBISFR1 [Mapview hg19]  SFR1 [Mapview hg38]
OMIM616527   
Gene and transcription
Genbank (Entrez)AK123954 AK291184 BC020892 BC043256 BC047587
RefSeq transcript (Entrez)NM_001002759 NM_145247
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)SFR1
Cluster EST : UnigeneHs.93667 [ NCBI ]
CGAP (NCI)Hs.93667
Alternative Splicing GalleryENSG00000156384
Gene ExpressionSFR1 [ NCBI-GEO ]   SFR1 [ EBI - ARRAY_EXPRESS ]   SFR1 [ SEEK ]   SFR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SFR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119392
GTEX Portal (Tissue expression)SFR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XK3
Splice isoforms : SwissVarQ86XK3
PhosPhoSitePlusQ86XK3
Domains : Interpro (EBI)Ds-recomb_repair_prot_Mei5   
Domain families : Pfam (Sanger)Mei5 (PF10376)   
Domain families : Pfam (NCBI)pfam10376   
Conserved Domain (NCBI)SFR1
DMDM Disease mutations119392
Blocks (Seattle)SFR1
SuperfamilyQ86XK3
Human Protein AtlasENSG00000156384
Peptide AtlasQ86XK3
HPRD12590
IPIIPI00748623   IPI00329238   IPI00455217   
Protein Interaction databases
DIP (DOE-UCLA)Q86XK3
IntAct (EBI)Q86XK3
FunCoupENSG00000156384
BioGRIDSFR1
STRING (EMBL)SFR1
ZODIACSFR1
Ontologies - Pathways
QuickGOQ86XK3
Ontology : AmiGOdouble-strand break repair via homologous recombination  protein binding  nucleus  nucleus  transcription, DNA-templated  ligand-dependent nuclear receptor transcription coactivator activity  Swi5-Sfr1 complex  positive regulation of transcription, DNA-templated  cellular response to estrogen stimulus  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  protein binding  nucleus  nucleus  transcription, DNA-templated  ligand-dependent nuclear receptor transcription coactivator activity  Swi5-Sfr1 complex  positive regulation of transcription, DNA-templated  cellular response to estrogen stimulus  
NDEx NetworkSFR1
Atlas of Cancer Signalling NetworkSFR1
Wikipedia pathwaysSFR1
Orthology - Evolution
OrthoDB119392
GeneTree (enSembl)ENSG00000156384
Phylogenetic Trees/Animal Genes : TreeFamSFR1
HOVERGENQ86XK3
HOGENOMQ86XK3
Homologs : HomoloGeneSFR1
Homology/Alignments : Family Browser (UCSC)SFR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFR1
dbVarSFR1
ClinVarSFR1
1000_GenomesSFR1 
Exome Variant ServerSFR1
ExAC (Exome Aggregation Consortium)SFR1 (select the gene name)
Genetic variants : HAPMAP119392
Genomic Variants (DGV)SFR1 [DGVbeta]
DECIPHER (Syndromes)10:105881929-105886143  ENSG00000156384
CONAN: Copy Number AnalysisSFR1 
Mutations
ICGC Data PortalSFR1 
TCGA Data PortalSFR1 
Broad Tumor PortalSFR1
OASIS PortalSFR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SFR1
DgiDB (Drug Gene Interaction Database)SFR1
DoCM (Curated mutations)SFR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFR1 (select a term)
intoGenSFR1
Cancer3DSFR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616527   
Orphanet
MedgenSFR1
Genetic Testing Registry SFR1
NextProtQ86XK3 [Medical]
TSGene119392
GENETestsSFR1
Huge Navigator SFR1 [HugePedia]
snp3D : Map Gene to Disease119392
BioCentury BCIQSFR1
ClinGenSFR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119392
Chemical/Pharm GKB GenePA134989928
Clinical trialSFR1
Miscellaneous
canSAR (ICR)SFR1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFR1
EVEXSFR1
GoPubMedSFR1
iHOPSFR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:04 CEST 2017

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