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SFR1 (SWI5 dependent homologous recombination repair protein 1)

Identity

Alias (NCBI)C10orf78
MEI5
MEIR5
bA373N18.1
HGNC (Hugo) SFR1
HGNC Alias symbMEI5
bA373N18.1
FLJ41960
HGNC Previous nameC10orf78
 MEIR5
HGNC Previous namechromosome 10 open reading frame 78
 MEI5 recombination repair protein homolog (S. cerevisiae)
 SWI5-dependent recombination repair 1
 SWI5-dependent homologous recombination repair protein 1
LocusID (NCBI) 119392
Atlas_Id 43595
Location 10q25.1  [Link to chromosome band 10q25]
Location_base_pair Starts at 104122058 and ends at 104126385 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SFR1   29574
Cards
Entrez_Gene (NCBI)SFR1    SWI5 dependent homologous recombination repair protein 1
AliasesC10orf78; MEI5; MEIR5; bA373N18.1
GeneCards (Weizmann)SFR1
Ensembl hg19 (Hinxton)ENSG00000156384 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156384 [Gene_View]  ENSG00000156384 [Sequence]  chr10:104122058-104126385 [Contig_View]  SFR1 [Vega]
ICGC DataPortalENSG00000156384
TCGA cBioPortalSFR1
AceView (NCBI)SFR1
Genatlas (Paris)SFR1
SOURCE (Princeton)SFR1
Genetics Home Reference (NIH)SFR1
Genomic and cartography
GoldenPath hg38 (UCSC)SFR1  -     chr10:104122058-104126385 +  10q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFR1  -     10q25.1   [Description]    (hg19-Feb_2009)
GoldenPathSFR1 - 10q25.1 [CytoView hg19]  SFR1 - 10q25.1 [CytoView hg38]
ImmunoBaseENSG00000156384
Genome Data Viewer NCBISFR1 [Mapview hg19]  
OMIM616527   
Gene and transcription
Genbank (Entrez)AK123954 AK291184 BC020892 BC043256 BC047587
RefSeq transcript (Entrez)NM_001002759 NM_001384829 NM_001384830 NM_145247
Consensus coding sequences : CCDS (NCBI)SFR1
Gene ExpressionSFR1 [ NCBI-GEO ]   SFR1 [ EBI - ARRAY_EXPRESS ]   SFR1 [ SEEK ]   SFR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SFR1 [ Firebrowse - Broad ]
GenevisibleExpression of SFR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119392
GTEX Portal (Tissue expression)SFR1
Human Protein AtlasENSG00000156384-SFR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XK3
PhosPhoSitePlusQ86XK3
Domains : Interpro (EBI)SFR1    SFR1/Mei5   
Domain families : Pfam (Sanger)Mei5 (PF10376)   
Domain families : Pfam (NCBI)pfam10376   
Conserved Domain (NCBI)SFR1
SuperfamilyQ86XK3
AlphaFold pdb e-kbQ86XK3   
Human Protein Atlas [tissue]ENSG00000156384-SFR1 [tissue]
HPRD12590
Protein Interaction databases
DIP (DOE-UCLA)Q86XK3
IntAct (EBI)Q86XK3
BioGRIDSFR1
STRING (EMBL)SFR1
ZODIACSFR1
Ontologies - Pathways
QuickGOQ86XK3
Ontology : AmiGOdouble-strand break repair via homologous recombination  double-strand break repair via homologous recombination  protein binding  nucleus  nucleus  nuclear receptor coactivator activity  nuclear receptor coactivator activity  Swi5-Sfr1 complex  Swi5-Sfr1 complex  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  cellular response to estrogen stimulus  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  double-strand break repair via homologous recombination  protein binding  nucleus  nucleus  nuclear receptor coactivator activity  nuclear receptor coactivator activity  Swi5-Sfr1 complex  Swi5-Sfr1 complex  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  cellular response to estrogen stimulus  
NDEx NetworkSFR1
Atlas of Cancer Signalling NetworkSFR1
Wikipedia pathwaysSFR1
Orthology - Evolution
OrthoDB119392
GeneTree (enSembl)ENSG00000156384
Phylogenetic Trees/Animal Genes : TreeFamSFR1
Homologs : HomoloGeneSFR1
Homology/Alignments : Family Browser (UCSC)SFR1
Gene fusions - Rearrangements
Fusion : QuiverSFR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFR1
dbVarSFR1
ClinVarSFR1
MonarchSFR1
1000_GenomesSFR1 
Exome Variant ServerSFR1
GNOMAD BrowserENSG00000156384
Varsome BrowserSFR1
ACMGSFR1 variants
VarityQ86XK3
Genomic Variants (DGV)SFR1 [DGVbeta]
DECIPHERSFR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFR1 
Mutations
ICGC Data PortalSFR1 
TCGA Data PortalSFR1 
Broad Tumor PortalSFR1
OASIS PortalSFR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSFR1
Mutations and Diseases : HGMDSFR1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSFR1
DgiDB (Drug Gene Interaction Database)SFR1
DoCM (Curated mutations)SFR1
CIViC (Clinical Interpretations of Variants in Cancer)SFR1
Cancer3DSFR1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616527   
Orphanet
DisGeNETSFR1
MedgenSFR1
Genetic Testing Registry SFR1
NextProtQ86XK3 [Medical]
GENETestsSFR1
Target ValidationSFR1
Huge Navigator SFR1 [HugePedia]
ClinGenSFR1
Clinical trials, drugs, therapy
MyCancerGenomeSFR1
Protein Interactions : CTDSFR1
Pharm GKB GenePA134989928
PharosQ86XK3
Clinical trialSFR1
Miscellaneous
canSAR (ICR)SFR1
HarmonizomeSFR1
DataMed IndexSFR1
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSFR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:30:53 CEST 2021

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