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SFSWAP (splicing factor SWAP homolog)

Identity

Alias_namesSFRS8
splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot, Drosophila homolog)
splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)
splicing factor, suppressor of white-apricot homolog (Drosophila)
splicing factor, suppressor of white-apricot homolog
Alias_symbol (synonym)SWAP
Other alias
HGNC (Hugo) SFSWAP
LocusID (NCBI) 6433
Atlas_Id 73166
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 131711087 and ends at 131799738 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EP400 (12q24.33) / SFSWAP (12q24.33)PUS1 (12q24.33) / SFSWAP (12q24.33)PWP2 (21q22.3) / SFSWAP (12q24.33)
SFSWAP (12q24.33) / CYP11A1 (15q24.1)SFSWAP (12q24.33) / MYO1H (12q24.11)SFSWAP (12q24.33) / SFSWAP (12q24.33)
EP400 SFSWAPPWP2 SFSWAP

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFSWAP   10790
Cards
Entrez_Gene (NCBI)SFSWAP  6433  splicing factor SWAP homolog
AliasesSFRS8; SWAP
GeneCards (Weizmann)SFSWAP
Ensembl hg19 (Hinxton)ENSG00000061936 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000061936 [Gene_View]  chr12:131711087-131799738 [Contig_View]  SFSWAP [Vega]
ICGC DataPortalENSG00000061936
TCGA cBioPortalSFSWAP
AceView (NCBI)SFSWAP
Genatlas (Paris)SFSWAP
WikiGenes6433
SOURCE (Princeton)SFSWAP
Genetics Home Reference (NIH)SFSWAP
Genomic and cartography
GoldenPath hg38 (UCSC)SFSWAP  -     chr12:131711087-131799738 +  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFSWAP  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblSFSWAP - 12q24.33 [CytoView hg19]  SFSWAP - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBISFSWAP [Mapview hg19]  SFSWAP [Mapview hg38]
OMIM601945   
Gene and transcription
Genbank (Entrez)AA410512 AB208921 AK295149 AK310836 BC008707
RefSeq transcript (Entrez)NM_001261411 NM_004592 NM_152235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SFSWAP
Cluster EST : UnigeneHs.308171 [ NCBI ]
CGAP (NCI)Hs.308171
Alternative Splicing GalleryENSG00000061936
Gene ExpressionSFSWAP [ NCBI-GEO ]   SFSWAP [ EBI - ARRAY_EXPRESS ]   SFSWAP [ SEEK ]   SFSWAP [ MEM ]
Gene Expression Viewer (FireBrowse)SFSWAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6433
GTEX Portal (Tissue expression)SFSWAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12872   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12872  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12872
Splice isoforms : SwissVarQ12872
PhosPhoSitePlusQ12872
Domaine pattern : Prosite (Expaxy)SURP (PS50128)   
Domains : Interpro (EBI)Surp    SWAP_N_domain   
Domain families : Pfam (Sanger)DRY_EERY (PF09750)    Surp (PF01805)   
Domain families : Pfam (NCBI)pfam09750    pfam01805   
Domain families : Smart (EMBL)DRY_EERY (SM01141)  SWAP (SM00648)  
Conserved Domain (NCBI)SFSWAP
DMDM Disease mutations6433
Blocks (Seattle)SFSWAP
PDB (SRS)2E5Z    2E60   
PDB (PDBSum)2E5Z    2E60   
PDB (IMB)2E5Z    2E60   
PDB (RSDB)2E5Z    2E60   
Structural Biology KnowledgeBase2E5Z    2E60   
SCOP (Structural Classification of Proteins)2E5Z    2E60   
CATH (Classification of proteins structures)2E5Z    2E60   
SuperfamilyQ12872
Human Protein AtlasENSG00000061936
Peptide AtlasQ12872
HPRD09055
IPIIPI00290094   IPI01014926   IPI01015856   IPI01012731   IPI00790550   IPI01011310   
Protein Interaction databases
DIP (DOE-UCLA)Q12872
IntAct (EBI)Q12872
FunCoupENSG00000061936
BioGRIDSFSWAP
STRING (EMBL)SFSWAP
ZODIACSFSWAP
Ontologies - Pathways
QuickGOQ12872
Ontology : AmiGOalternative mRNA splicing, via spliceosome  mRNA 5'-splice site recognition  RNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of mRNA splicing, via spliceosome  
Ontology : EGO-EBIalternative mRNA splicing, via spliceosome  mRNA 5'-splice site recognition  RNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of mRNA splicing, via spliceosome  
NDEx NetworkSFSWAP
Atlas of Cancer Signalling NetworkSFSWAP
Wikipedia pathwaysSFSWAP
Orthology - Evolution
OrthoDB6433
GeneTree (enSembl)ENSG00000061936
Phylogenetic Trees/Animal Genes : TreeFamSFSWAP
HOVERGENQ12872
HOGENOMQ12872
Homologs : HomoloGeneSFSWAP
Homology/Alignments : Family Browser (UCSC)SFSWAP
Gene fusions - Rearrangements
Fusion: TCGAEP400 SFSWAP
Fusion: TCGAPWP2 SFSWAP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFSWAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFSWAP
dbVarSFSWAP
ClinVarSFSWAP
1000_GenomesSFSWAP 
Exome Variant ServerSFSWAP
ExAC (Exome Aggregation Consortium)SFSWAP (select the gene name)
Genetic variants : HAPMAP6433
Genomic Variants (DGV)SFSWAP [DGVbeta]
DECIPHERSFSWAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFSWAP 
Mutations
ICGC Data PortalSFSWAP 
TCGA Data PortalSFSWAP 
Broad Tumor PortalSFSWAP
OASIS PortalSFSWAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFSWAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFSWAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SFSWAP
DgiDB (Drug Gene Interaction Database)SFSWAP
DoCM (Curated mutations)SFSWAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFSWAP (select a term)
intoGenSFSWAP
Cancer3DSFSWAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601945   
Orphanet
MedgenSFSWAP
Genetic Testing Registry SFSWAP
NextProtQ12872 [Medical]
TSGene6433
GENETestsSFSWAP
Target ValidationSFSWAP
Huge Navigator SFSWAP [HugePedia]
snp3D : Map Gene to Disease6433
BioCentury BCIQSFSWAP
ClinGenSFSWAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6433
Chemical/Pharm GKB GenePA35706
Clinical trialSFSWAP
Miscellaneous
canSAR (ICR)SFSWAP (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFSWAP
EVEXSFSWAP
GoPubMedSFSWAP
iHOPSFSWAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:30 CEST 2017

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