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SFT2D1 (SFT2 domain containing 1)

Identity

Alias_namesC6orf83
chromosome 6 open reading frame 83
Alias_symbol (synonym)MGC19825
pRGR1
Other alias
HGNC (Hugo) SFT2D1
LocusID (NCBI) 113402
Atlas_Id 73167
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 166319728 and ends at 166342606 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ENG (9q34.11) / SFT2D1 (6q27)SFT2D1 (6q27) / GMFB (14q22.2)SFT2D1 (6q27) / SFT2D1 (6q27)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFT2D1   21102
Cards
Entrez_Gene (NCBI)SFT2D1  113402  SFT2 domain containing 1
AliasesC6orf83; pRGR1
GeneCards (Weizmann)SFT2D1
Ensembl hg19 (Hinxton)ENSG00000198818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198818 [Gene_View]  ENSG00000198818 [Sequence]  chr6:166319728-166342606 [Contig_View]  SFT2D1 [Vega]
ICGC DataPortalENSG00000198818
TCGA cBioPortalSFT2D1
AceView (NCBI)SFT2D1
Genatlas (Paris)SFT2D1
WikiGenes113402
SOURCE (Princeton)SFT2D1
Genetics Home Reference (NIH)SFT2D1
Genomic and cartography
GoldenPath hg38 (UCSC)SFT2D1  -     chr6:166319728-166342606 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFT2D1  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblSFT2D1 - 6q27 [CytoView hg19]  SFT2D1 - 6q27 [CytoView hg38]
Mapping of homologs : NCBISFT2D1 [Mapview hg19]  SFT2D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF041429 AK021489 AK090795 AL833217 AW964442
RefSeq transcript (Entrez)NM_145169
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SFT2D1
Cluster EST : UnigeneHs.487143 [ NCBI ]
CGAP (NCI)Hs.487143
Alternative Splicing GalleryENSG00000198818
Gene ExpressionSFT2D1 [ NCBI-GEO ]   SFT2D1 [ EBI - ARRAY_EXPRESS ]   SFT2D1 [ SEEK ]   SFT2D1 [ MEM ]
Gene Expression Viewer (FireBrowse)SFT2D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113402
GTEX Portal (Tissue expression)SFT2D1
Human Protein AtlasENSG00000198818-SFT2D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV19
Splice isoforms : SwissVarQ8WV19
PhosPhoSitePlusQ8WV19
Domains : Interpro (EBI)Vesicle_transpt_Got1/SFT2    Vesicle_transpt_SFT2   
Domain families : Pfam (Sanger)Got1 (PF04178)   
Domain families : Pfam (NCBI)pfam04178   
Conserved Domain (NCBI)SFT2D1
DMDM Disease mutations113402
Blocks (Seattle)SFT2D1
SuperfamilyQ8WV19
Human Protein Atlas [tissue]ENSG00000198818-SFT2D1 [tissue]
Peptide AtlasQ8WV19
HPRD12903
IPIIPI00155634   IPI00643549   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV19
IntAct (EBI)Q8WV19
FunCoupENSG00000198818
BioGRIDSFT2D1
STRING (EMBL)SFT2D1
ZODIACSFT2D1
Ontologies - Pathways
QuickGOQ8WV19
Ontology : AmiGOprotein transport  membrane  integral component of membrane  vesicle-mediated transport  
Ontology : EGO-EBIprotein transport  membrane  integral component of membrane  vesicle-mediated transport  
NDEx NetworkSFT2D1
Atlas of Cancer Signalling NetworkSFT2D1
Wikipedia pathwaysSFT2D1
Orthology - Evolution
OrthoDB113402
GeneTree (enSembl)ENSG00000198818
Phylogenetic Trees/Animal Genes : TreeFamSFT2D1
HOVERGENQ8WV19
HOGENOMQ8WV19
Homologs : HomoloGeneSFT2D1
Homology/Alignments : Family Browser (UCSC)SFT2D1
Gene fusions - Rearrangements
Fusion : QuiverSFT2D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFT2D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFT2D1
dbVarSFT2D1
ClinVarSFT2D1
1000_GenomesSFT2D1 
Exome Variant ServerSFT2D1
ExAC (Exome Aggregation Consortium)ENSG00000198818
GNOMAD BrowserENSG00000198818
Varsome BrowserSFT2D1
Genetic variants : HAPMAP113402
Genomic Variants (DGV)SFT2D1 [DGVbeta]
DECIPHERSFT2D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFT2D1 
Mutations
ICGC Data PortalSFT2D1 
TCGA Data PortalSFT2D1 
Broad Tumor PortalSFT2D1
OASIS PortalSFT2D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFT2D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFT2D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SFT2D1
DgiDB (Drug Gene Interaction Database)SFT2D1
DoCM (Curated mutations)SFT2D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFT2D1 (select a term)
intoGenSFT2D1
Cancer3DSFT2D1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSFT2D1
MedgenSFT2D1
Genetic Testing Registry SFT2D1
NextProtQ8WV19 [Medical]
TSGene113402
GENETestsSFT2D1
Target ValidationSFT2D1
Huge Navigator SFT2D1 [HugePedia]
snp3D : Map Gene to Disease113402
BioCentury BCIQSFT2D1
ClinGenSFT2D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113402
Chemical/Pharm GKB GenePA134962126
Clinical trialSFT2D1
Miscellaneous
canSAR (ICR)SFT2D1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFT2D1
EVEXSFT2D1
GoPubMedSFT2D1
iHOPSFT2D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:28:42 CEST 2018

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