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SFT2D2 (SFT2 domain containing 2)

Identity

Alias_symbol (synonym)UNQ512
dJ747L4.C1.2
Other alias
HGNC (Hugo) SFT2D2
LocusID (NCBI) 375035
Atlas_Id 73168
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168226017 and ends at 168242850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SFT2D2 (1q24.2) / TBX19 (1q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFT2D2   25140
Cards
Entrez_Gene (NCBI)SFT2D2  375035  SFT2 domain containing 2
AliasesUNQ512; dJ747L4.C1.2
GeneCards (Weizmann)SFT2D2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:168226017-168242850 [Contig_View]  SFT2D2 [Vega]
TCGA cBioPortalSFT2D2
AceView (NCBI)SFT2D2
Genatlas (Paris)SFT2D2
WikiGenes375035
SOURCE (Princeton)SFT2D2
Genetics Home Reference (NIH)SFT2D2
Genomic and cartography
GoldenPath hg38 (UCSC)SFT2D2  -     chr1:168226017-168242850 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFT2D2  -     1q24.2   [Description]    (hg19-Feb_2009)
EnsemblSFT2D2 - 1q24.2 [CytoView hg19]  SFT2D2 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBISFT2D2 [Mapview hg19]  SFT2D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK290325 AL035297 AY358675 BC068098 HQ447551
RefSeq transcript (Entrez)NM_199344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SFT2D2
Cluster EST : UnigeneHs.645435 [ NCBI ]
CGAP (NCI)Hs.645435
Gene ExpressionSFT2D2 [ NCBI-GEO ]   SFT2D2 [ EBI - ARRAY_EXPRESS ]   SFT2D2 [ SEEK ]   SFT2D2 [ MEM ]
Gene Expression Viewer (FireBrowse)SFT2D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375035
GTEX Portal (Tissue expression)SFT2D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95562   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95562  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95562
Splice isoforms : SwissVarO95562
PhosPhoSitePlusO95562
Domains : Interpro (EBI)Vesicle_transpt_Got1/SFT2    Vesicle_transpt_SFT2   
Domain families : Pfam (Sanger)Got1 (PF04178)   
Domain families : Pfam (NCBI)pfam04178   
Conserved Domain (NCBI)SFT2D2
DMDM Disease mutations375035
Blocks (Seattle)SFT2D2
SuperfamilyO95562
Peptide AtlasO95562
HPRD14192
IPIIPI00029002   IPI00515027   
Protein Interaction databases
DIP (DOE-UCLA)O95562
IntAct (EBI)O95562
BioGRIDSFT2D2
STRING (EMBL)SFT2D2
ZODIACSFT2D2
Ontologies - Pathways
QuickGOO95562
Ontology : AmiGOmolecular_function  biological_process  protein transport  membrane  integral component of membrane  vesicle-mediated transport  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  protein transport  membrane  integral component of membrane  vesicle-mediated transport  extracellular exosome  
NDEx NetworkSFT2D2
Atlas of Cancer Signalling NetworkSFT2D2
Wikipedia pathwaysSFT2D2
Orthology - Evolution
OrthoDB375035
Phylogenetic Trees/Animal Genes : TreeFamSFT2D2
HOVERGENO95562
HOGENOMO95562
Homologs : HomoloGeneSFT2D2
Homology/Alignments : Family Browser (UCSC)SFT2D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFT2D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFT2D2
dbVarSFT2D2
ClinVarSFT2D2
1000_GenomesSFT2D2 
Exome Variant ServerSFT2D2
ExAC (Exome Aggregation Consortium)SFT2D2 (select the gene name)
Genetic variants : HAPMAP375035
Genomic Variants (DGV)SFT2D2 [DGVbeta]
DECIPHERSFT2D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFT2D2 
Mutations
ICGC Data PortalSFT2D2 
TCGA Data PortalSFT2D2 
Broad Tumor PortalSFT2D2
OASIS PortalSFT2D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFT2D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFT2D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared inspallavin
BioMutasearch SFT2D2
DgiDB (Drug Gene Interaction Database)SFT2D2
DoCM (Curated mutations)SFT2D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFT2D2 (select a term)
intoGenSFT2D2
Cancer3DSFT2D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSFT2D2
Genetic Testing Registry SFT2D2
NextProtO95562 [Medical]
TSGene375035
GENETestsSFT2D2
Target ValidationSFT2D2
Huge Navigator SFT2D2 [HugePedia]
snp3D : Map Gene to Disease375035
BioCentury BCIQSFT2D2
ClinGenSFT2D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375035
Chemical/Pharm GKB GenePA142670928
Clinical trialSFT2D2
Miscellaneous
canSAR (ICR)SFT2D2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFT2D2
EVEXSFT2D2
GoPubMedSFT2D2
iHOPSFT2D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:39 CEST 2017

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