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SFT2D3 (SFT2 domain containing 3)

Identity

Alias_symbol (synonym)MGC5391
Other alias-
HGNC (Hugo) SFT2D3
LocusID (NCBI) 84826
Atlas_Id 73169
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 127701023 and ends at 127703833 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFT2D3   28767
Cards
Entrez_Gene (NCBI)SFT2D3  84826  SFT2 domain containing 3
Aliases
GeneCards (Weizmann)SFT2D3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:127701023-127703833 [Contig_View]  SFT2D3 [Vega]
TCGA cBioPortalSFT2D3
AceView (NCBI)SFT2D3
Genatlas (Paris)SFT2D3
WikiGenes84826
SOURCE (Princeton)SFT2D3
Genetics Home Reference (NIH)SFT2D3
Genomic and cartography
GoldenPath hg38 (UCSC)SFT2D3  -     chr2:127701023-127703833 +  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFT2D3  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblSFT2D3 - 2q14.3 [CytoView hg19]  SFT2D3 - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBISFT2D3 [Mapview hg19]  SFT2D3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074549 AW058154 BC006808 BC063637 BC110324
RefSeq transcript (Entrez)NM_032740
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SFT2D3
Cluster EST : UnigeneHs.700855 [ NCBI ]
CGAP (NCI)Hs.700855
Gene ExpressionSFT2D3 [ NCBI-GEO ]   SFT2D3 [ EBI - ARRAY_EXPRESS ]   SFT2D3 [ SEEK ]   SFT2D3 [ MEM ]
Gene Expression Viewer (FireBrowse)SFT2D3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84826
GTEX Portal (Tissue expression)SFT2D3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ587I9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ587I9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ587I9
Splice isoforms : SwissVarQ587I9
PhosPhoSitePlusQ587I9
Domains : Interpro (EBI)Vesicle_transpt_Got1/SFT2    Vesicle_transpt_SFT2   
Domain families : Pfam (Sanger)Got1 (PF04178)   
Domain families : Pfam (NCBI)pfam04178   
Conserved Domain (NCBI)SFT2D3
DMDM Disease mutations84826
Blocks (Seattle)SFT2D3
SuperfamilyQ587I9
Peptide AtlasQ587I9
HPRD14683
IPIIPI00166444   
Protein Interaction databases
DIP (DOE-UCLA)Q587I9
IntAct (EBI)Q587I9
BioGRIDSFT2D3
STRING (EMBL)SFT2D3
ZODIACSFT2D3
Ontologies - Pathways
QuickGOQ587I9
Ontology : AmiGOprotein transport  membrane  integral component of membrane  vesicle-mediated transport  
Ontology : EGO-EBIprotein transport  membrane  integral component of membrane  vesicle-mediated transport  
NDEx NetworkSFT2D3
Atlas of Cancer Signalling NetworkSFT2D3
Wikipedia pathwaysSFT2D3
Orthology - Evolution
OrthoDB84826
Phylogenetic Trees/Animal Genes : TreeFamSFT2D3
HOVERGENQ587I9
HOGENOMQ587I9
Homologs : HomoloGeneSFT2D3
Homology/Alignments : Family Browser (UCSC)SFT2D3
Gene fusions - Rearrangements
Fusion: Tumor Portal SFT2D3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFT2D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFT2D3
dbVarSFT2D3
ClinVarSFT2D3
1000_GenomesSFT2D3 
Exome Variant ServerSFT2D3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP84826
Genomic Variants (DGV)SFT2D3 [DGVbeta]
DECIPHERSFT2D3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFT2D3 
Mutations
ICGC Data PortalSFT2D3 
TCGA Data PortalSFT2D3 
Broad Tumor PortalSFT2D3
OASIS PortalSFT2D3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFT2D3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFT2D3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SFT2D3
DgiDB (Drug Gene Interaction Database)SFT2D3
DoCM (Curated mutations)SFT2D3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFT2D3 (select a term)
intoGenSFT2D3
Cancer3DSFT2D3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSFT2D3
Genetic Testing Registry SFT2D3
NextProtQ587I9 [Medical]
TSGene84826
GENETestsSFT2D3
Target ValidationSFT2D3
Huge Navigator SFT2D3 [HugePedia]
snp3D : Map Gene to Disease84826
BioCentury BCIQSFT2D3
ClinGenSFT2D3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84826
Chemical/Pharm GKB GenePA142670929
Clinical trialSFT2D3
Miscellaneous
canSAR (ICR)SFT2D3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFT2D3
EVEXSFT2D3
GoPubMedSFT2D3
iHOPSFT2D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 12:26:54 CET 2017

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