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SFTA2 (surfactant associated 2)

Identity

Alias_namesSFTPG
surfactant associated protein G
Other aliasGSGL541
SP-G
UNQ541
HGNC (Hugo) SFTA2
LocusID (NCBI) 389376
Atlas_Id 73171
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 30931350 and ends at 30932175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFTA2   18386
Cards
Entrez_Gene (NCBI)SFTA2  389376  surfactant associated 2
AliasesGSGL541; SFTPG; SP-G; UNQ541
GeneCards (Weizmann)SFTA2
Ensembl hg19 (Hinxton)ENSG00000196260 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196260 [Gene_View]  ENSG00000196260 [Sequence]  chr6:30931350-30932175 [Contig_View]  SFTA2 [Vega]
ICGC DataPortalENSG00000196260
TCGA cBioPortalSFTA2
AceView (NCBI)SFTA2
Genatlas (Paris)SFTA2
WikiGenes389376
SOURCE (Princeton)SFTA2
Genetics Home Reference (NIH)SFTA2
Genomic and cartography
GoldenPath hg38 (UCSC)SFTA2  -     chr6:30931350-30932175 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFTA2  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSFTA2 - 6p21.33 [CytoView hg19]  SFTA2 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISFTA2 [Mapview hg19]  SFTA2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI857998 AY102070 AY359057 BC039677 T94049
RefSeq transcript (Entrez)NM_205854
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)SFTA2
Cluster EST : UnigeneHs.211267 [ NCBI ]
CGAP (NCI)Hs.211267
Alternative Splicing GalleryENSG00000196260
Gene ExpressionSFTA2 [ NCBI-GEO ]   SFTA2 [ EBI - ARRAY_EXPRESS ]   SFTA2 [ SEEK ]   SFTA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SFTA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389376
GTEX Portal (Tissue expression)SFTA2
Human Protein AtlasENSG00000196260-SFTA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UW10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UW10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UW10
Splice isoforms : SwissVarQ6UW10
PhosPhoSitePlusQ6UW10
Domains : Interpro (EBI)SFTA2   
Domain families : Pfam (Sanger)SFTA2 (PF15210)   
Domain families : Pfam (NCBI)pfam15210   
Conserved Domain (NCBI)SFTA2
DMDM Disease mutations389376
Blocks (Seattle)SFTA2
SuperfamilyQ6UW10
Human Protein Atlas [tissue]ENSG00000196260-SFTA2 [tissue]
Peptide AtlasQ6UW10
HPRD18265
IPIIPI00409689   
Protein Interaction databases
DIP (DOE-UCLA)Q6UW10
IntAct (EBI)Q6UW10
FunCoupENSG00000196260
BioGRIDSFTA2
STRING (EMBL)SFTA2
ZODIACSFTA2
Ontologies - Pathways
QuickGOQ6UW10
Ontology : AmiGOextracellular region  Golgi apparatus  transport vesicle  
Ontology : EGO-EBIextracellular region  Golgi apparatus  transport vesicle  
NDEx NetworkSFTA2
Atlas of Cancer Signalling NetworkSFTA2
Wikipedia pathwaysSFTA2
Orthology - Evolution
OrthoDB389376
GeneTree (enSembl)ENSG00000196260
Phylogenetic Trees/Animal Genes : TreeFamSFTA2
HOVERGENQ6UW10
HOGENOMQ6UW10
Homologs : HomoloGeneSFTA2
Homology/Alignments : Family Browser (UCSC)SFTA2
Gene fusions - Rearrangements
Fusion : QuiverSFTA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFTA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFTA2
dbVarSFTA2
ClinVarSFTA2
1000_GenomesSFTA2 
Exome Variant ServerSFTA2
ExAC (Exome Aggregation Consortium)ENSG00000196260
GNOMAD BrowserENSG00000196260
Varsome BrowserSFTA2
Genetic variants : HAPMAP389376
Genomic Variants (DGV)SFTA2 [DGVbeta]
DECIPHERSFTA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFTA2 
Mutations
ICGC Data PortalSFTA2 
TCGA Data PortalSFTA2 
Broad Tumor PortalSFTA2
OASIS PortalSFTA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFTA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFTA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SFTA2
DgiDB (Drug Gene Interaction Database)SFTA2
DoCM (Curated mutations)SFTA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFTA2 (select a term)
intoGenSFTA2
Cancer3DSFTA2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSFTA2
MedgenSFTA2
Genetic Testing Registry SFTA2
NextProtQ6UW10 [Medical]
TSGene389376
GENETestsSFTA2
Target ValidationSFTA2
Huge Navigator SFTA2 [HugePedia]
snp3D : Map Gene to Disease389376
BioCentury BCIQSFTA2
ClinGenSFTA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389376
Chemical/Pharm GKB GenePA164725669
Clinical trialSFTA2
Miscellaneous
canSAR (ICR)SFTA2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFTA2
EVEXSFTA2
GoPubMedSFTA2
iHOPSFTA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:28:42 CEST 2018

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