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SFTA3 (surfactant associated 3)

Identity

Alias_namesSFTPH
surfactant associated protein H
Alias_symbol (synonym)NANCI
Other aliasSP-H
HGNC (Hugo) SFTA3
LocusID (NCBI) 253970
Atlas_Id 73172
Location 14q13.3  [Link to chromosome band 14q13]
Location_base_pair Starts at 36942494 and ends at 36982990 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BAHCC1 (17q25.3) / SFTA3 (14q13.3)BAZ1A (14q13.1) / SFTA3 (14q13.3)CDKN3 (14q22.2) / SFTA3 (14q13.3)
NKX2-1 (14q13.3) / SFTA3 (14q13.3)SFTA3 (14q13.3) / NKX2-1 (14q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFTA3   18387
Cards
Entrez_Gene (NCBI)SFTA3  253970  surfactant associated 3
AliasesNANCI; SFTPH; SP-H
GeneCards (Weizmann)SFTA3
Ensembl hg19 (Hinxton)ENSG00000229415 [Gene_View]  chr14:36942494-36982990 [Contig_View]  SFTA3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000229415 [Gene_View]  chr14:36942494-36982990 [Contig_View]  SFTA3 [Vega]
ICGC DataPortalENSG00000229415
TCGA cBioPortalSFTA3
AceView (NCBI)SFTA3
Genatlas (Paris)SFTA3
WikiGenes253970
SOURCE (Princeton)SFTA3
Genetics Home Reference (NIH)SFTA3
Genomic and cartography
GoldenPath hg19 (UCSC)SFTA3  -     chr14:36942494-36982990 -  14q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SFTA3  -     14q13.3   [Description]    (hg38-Dec_2013)
EnsemblSFTA3 - 14q13.3 [CytoView hg19]  SFTA3 - 14q13.3 [CytoView hg38]
Mapping of homologs : NCBISFTA3 [Mapview hg19]  SFTA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027147 AY102071 BC042093 BC129834 KF856952
RefSeq transcript (Entrez)NM_001101341
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)SFTA3
Cluster EST : UnigeneHs.509165 [ NCBI ]
CGAP (NCI)Hs.509165
Alternative Splicing GalleryENSG00000229415
Gene ExpressionSFTA3 [ NCBI-GEO ]   SFTA3 [ EBI - ARRAY_EXPRESS ]   SFTA3 [ SEEK ]   SFTA3 [ MEM ]
Gene Expression Viewer (FireBrowse)SFTA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253970
GTEX Portal (Tissue expression)SFTA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7M3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7M3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7M3
Splice isoforms : SwissVarP0C7M3
PhosPhoSitePlusP0C7M3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SFTA3
DMDM Disease mutations253970
Blocks (Seattle)SFTA3
SuperfamilyP0C7M3
Human Protein AtlasENSG00000229415
Peptide AtlasP0C7M3
IPIIPI00867736   IPI00978763   IPI00976144   
Protein Interaction databases
DIP (DOE-UCLA)P0C7M3
IntAct (EBI)P0C7M3
FunCoupENSG00000229415
BioGRIDSFTA3
STRING (EMBL)SFTA3
ZODIACSFTA3
Ontologies - Pathways
QuickGOP0C7M3
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkSFTA3
Atlas of Cancer Signalling NetworkSFTA3
Wikipedia pathwaysSFTA3
Orthology - Evolution
OrthoDB253970
GeneTree (enSembl)ENSG00000229415
Phylogenetic Trees/Animal Genes : TreeFamSFTA3
HOVERGENP0C7M3
HOGENOMP0C7M3
Homologs : HomoloGeneSFTA3
Homology/Alignments : Family Browser (UCSC)SFTA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFTA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFTA3
dbVarSFTA3
ClinVarSFTA3
1000_GenomesSFTA3 
Exome Variant ServerSFTA3
ExAC (Exome Aggregation Consortium)SFTA3 (select the gene name)
Genetic variants : HAPMAP253970
Genomic Variants (DGV)SFTA3 [DGVbeta]
DECIPHER (Syndromes)14:36942494-36982990  ENSG00000229415
CONAN: Copy Number AnalysisSFTA3 
Mutations
ICGC Data PortalSFTA3 
TCGA Data PortalSFTA3 
Broad Tumor PortalSFTA3
OASIS PortalSFTA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFTA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFTA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SFTA3
DgiDB (Drug Gene Interaction Database)SFTA3
DoCM (Curated mutations)SFTA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFTA3 (select a term)
intoGenSFTA3
Cancer3DSFTA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSFTA3
Genetic Testing Registry SFTA3
NextProtP0C7M3 [Medical]
TSGene253970
GENETestsSFTA3
Huge Navigator SFTA3 [HugePedia]
snp3D : Map Gene to Disease253970
BioCentury BCIQSFTA3
ClinGenSFTA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253970
Chemical/Pharm GKB GenePA164725680
Clinical trialSFTA3
Miscellaneous
canSAR (ICR)SFTA3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFTA3
EVEXSFTA3
GoPubMedSFTA3
iHOPSFTA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:58 CET 2017

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