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SFTPA1 (surfactant protein A1)

Identity

Alias (NCBI)COLEC4
PSAP
PSP-A
PSPA
SFTP1
SFTPA1B
SP-A
SP-A1
SP-A1 beta
SP-A1 delta
SP-A1 epsilon
SP-A1 gamma
SPA
SPA1
HGNC (Hugo) SFTPA1
HGNC Alias symbSP-A
SP-A1
COLEC4
HGNC Alias namesurfactant, pulmonary-associated protein A1A
HGNC Previous nameSFTP1
HGNC Previous namesurfactant, pulmonary-associated protein A1
LocusID (NCBI) 653509
Atlas_Id 51251
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 79610939 and ends at 79615443 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SFTPA1   10798
Cards
Entrez_Gene (NCBI)SFTPA1    surfactant protein A1
AliasesCOLEC4; PSAP; PSP-A; PSPA; 
SFTP1; SFTPA1B; SP-A; SP-A1; SP-A1; SP-A1; SP-A1; SP-A1; SPA; SPA1
GeneCards (Weizmann)SFTPA1
Ensembl hg19 (Hinxton)ENSG00000122852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122852 [Gene_View]  ENSG00000122852 [Sequence]  chr10:79610939-79615443 [Contig_View]  SFTPA1 [Vega]
ICGC DataPortalENSG00000122852
TCGA cBioPortalSFTPA1
AceView (NCBI)SFTPA1
Genatlas (Paris)SFTPA1
SOURCE (Princeton)SFTPA1
Genetics Home Reference (NIH)SFTPA1
Genomic and cartography
GoldenPath hg38 (UCSC)SFTPA1  -     chr10:79610939-79615443 +  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFTPA1  -     10q22.3   [Description]    (hg19-Feb_2009)
GoldenPathSFTPA1 - 10q22.3 [CytoView hg19]  SFTPA1 - 10q22.3 [CytoView hg38]
ImmunoBaseENSG00000122852
Genome Data Viewer NCBISFTPA1 [Mapview hg19]  
OMIM178630   
Gene and transcription
Genbank (Entrez)AK290703 AK298002 AK298029 AK298034 AK298092
RefSeq transcript (Entrez)NM_001093770 NM_001164644 NM_001164645 NM_001164646 NM_001164647 NM_005411
Consensus coding sequences : CCDS (NCBI)SFTPA1
Gene ExpressionSFTPA1 [ NCBI-GEO ]   SFTPA1 [ EBI - ARRAY_EXPRESS ]   SFTPA1 [ SEEK ]   SFTPA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SFTPA1 [ Firebrowse - Broad ]
GenevisibleExpression of SFTPA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653509
GTEX Portal (Tissue expression)SFTPA1
Human Protein AtlasENSG00000122852-SFTPA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SFTPA1
Human Protein Atlas [tissue]ENSG00000122852-SFTPA1 [tissue]
Protein Interaction databases
BioGRIDSFTPA1
STRING (EMBL)SFTPA1
ZODIACSFTPA1
Ontologies - Pathways
Litterature
PubMed194 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSFTPA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:30:54 CEST 2021

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