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SFTPC (surfactant protein C)

Identity

Other namesBRICD6
PSP-C
SFTP2
SMDP2
SP-C
HGNC (Hugo) SFTPC
LocusID (NCBI) 6440
Location 8p21.3
Location_base_pair Starts at 22019184 and ends at 22021991 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SFTPC   10802
Cards
Entrez_Gene (NCBI)SFTPC  6440  surfactant protein C
GeneCards (Weizmann)SFTPC
Ensembl (Hinxton)ENSG00000168484 [Gene_View]  chr8:22019184-22021991 [Contig_View]  SFTPC [Vega]
ICGC DataPortalENSG00000168484
AceView (NCBI)SFTPC
Genatlas (Paris)SFTPC
WikiGenes6440
SOURCE (Princeton)NM_001172357 NM_001172410 NM_003018
Genomic and cartography
GoldenPath (UCSC)SFTPC  -  8p21.3   chr8:22019184-22021991 +  8p21.3   [Description]    (hg19-Feb_2009)
EnsemblSFTPC - 8p21.3 [CytoView]
Mapping of homologs : NCBISFTPC [Mapview]
OMIM178500   178620   610913   
Gene and transcription
Genbank (Entrez)AK058094 AK298119 AK315742 BC005913 BC105594
RefSeq transcript (Entrez)NM_001172357 NM_001172410 NM_003018
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_016968 NG_029659 NT_167187 NW_001839127 NW_004929337
Consensus coding sequences : CCDS (NCBI)SFTPC
Cluster EST : UnigeneHs.1074 [ NCBI ]
CGAP (NCI)Hs.1074
Alternative Splicing GalleryENSG00000168484
Gene ExpressionSFTPC [ NCBI-GEO ]     SFTPC [ SEEK ]   SFTPC [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11686 (Uniprot)
NextProtP11686  [Medical]
With graphics : InterProP11686
Splice isoforms : SwissVarP11686 (Swissvar)
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)    SURFACT_PALMITOYL (PS00341)   
Domains : Interpro (EBI)BRICHOS_dom    Pulm_surfact_AP    SP-C_palmitoylation_site    Surfactant_protein_propep   
Related proteins : CluSTrP11686
Domain families : Pfam (Sanger)BRICHOS (PF04089)    SP_C-Propep (PF08999)   
Domain families : Pfam (NCBI)pfam04089    pfam08999   
Domain families : Smart (EMBL)BRICHOS (SM01039)  SF_P (SM00019)  
DMDM Disease mutations6440
Blocks (Seattle)P11686
PDB (SRS)2YAD   
PDB (PDBSum)2YAD   
PDB (IMB)2YAD   
PDB (RSDB)2YAD   
Human Protein AtlasENSG00000168484
Peptide AtlasP11686
HPRD01520
IPIIPI00006707   IPI00218499   IPI01008760   IPI00792510   IPI00793845   IPI00939469   IPI00794401   IPI00979021   IPI00974461   
Protein Interaction databases
DIP (DOE-UCLA)P11686
IntAct (EBI)P11686
FunCoupENSG00000168484
BioGRIDSFTPC
InParanoidP11686
Interologous Interaction database P11686
IntegromeDBSFTPC
STRING (EMBL)SFTPC
Ontologies - Pathways
Ontology : AmiGOprotein binding  extracellular space  multivesicular body  respiratory gaseous exchange  circadian rhythm  response to glucose  response to lipopolysaccharide  response to retinoic acid  response to vitamin A  protein homodimerization activity  protein homooligomerization  response to glucocorticoid  response to cAMP  response to hyperoxia  response to interleukin-6  response to growth factor  cellular response to mechanical stimulus  cellular response to nitric oxide  alveolar lamellar body  
Ontology : EGO-EBIprotein binding  extracellular space  multivesicular body  respiratory gaseous exchange  circadian rhythm  response to glucose  response to lipopolysaccharide  response to retinoic acid  response to vitamin A  protein homodimerization activity  protein homooligomerization  response to glucocorticoid  response to cAMP  response to hyperoxia  response to interleukin-6  response to growth factor  cellular response to mechanical stimulus  cellular response to nitric oxide  alveolar lamellar body  
Protein Interaction DatabaseSFTPC
Wikipedia pathwaysSFTPC
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SFTPC
SNP (GeneSNP Utah)SFTPC
SNP : HGBaseSFTPC
Genetic variants : HAPMAPSFTPC
1000_GenomesSFTPC 
ICGC programENSG00000168484 
CONAN: Copy Number AnalysisSFTPC 
Somatic Mutations in Cancer : COSMICSFTPC 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDSFTPC
OMIM178500    178620    610913   
MedgenSFTPC
GENETestsSFTPC
Disease Genetic AssociationSFTPC
Huge Navigator SFTPC [HugePedia]  SFTPC [HugeCancerGEM]
Genomic VariantsSFTPC  SFTPC [DGVbeta]
Exome VariantSFTPC
dbVarSFTPC
ClinVarSFTPC
snp3D : Map Gene to Disease6440
General knowledge
Homologs : HomoloGeneSFTPC
Homology/Alignments : Family Browser (UCSC)SFTPC
Phylogenetic Trees/Animal Genes : TreeFamSFTPC
Chemical/Protein Interactions : CTD6440
Chemical/Pharm GKB GenePA35714
Clinical trialSFTPC
Cancer Resource (Charite)ENSG00000168484
Other databases
Probes
Litterature
PubMed96 Pubmed reference(s) in Entrez
CoreMineSFTPC
iHOPSFTPC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:16:08 CEST 2014

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