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SFTPC (surfactant protein C)

Identity

Other namesBRICD6
PSP-C
SFTP2
SMDP2
SP-C
HGNC (Hugo) SFTPC
LocusID (NCBI) 6440
Atlas_Id 53745
Location 8p21.3
Location_base_pair Starts at 22019184 and ends at 22021991 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SFTPC   10802
Cards
Entrez_Gene (NCBI)SFTPC  6440  surfactant protein C
GeneCards (Weizmann)SFTPC
Ensembl hg19 (Hinxton)ENSG00000168484 [Gene_View]  chr8:22019184-22021991 [Contig_View]  SFTPC [Vega]
Ensembl hg38 (Hinxton)ENSG00000168484 [Gene_View]  chr8:22019184-22021991 [Contig_View]  SFTPC [Vega]
ICGC DataPortalENSG00000168484
TCGA cBioPortalSFTPC
AceView (NCBI)SFTPC
Genatlas (Paris)SFTPC
WikiGenes6440
SOURCE (Princeton)SFTPC
Genomic and cartography
GoldenPath hg19 (UCSC)SFTPC  -     chr8:22019184-22021991 +  8p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SFTPC  -     8p21.3   [Description]    (hg38-Dec_2013)
EnsemblSFTPC - 8p21.3 [CytoView hg19]  SFTPC - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBISFTPC [Mapview hg19]  SFTPC [Mapview hg38]
OMIM178500   178620   610913   
Gene and transcription
Genbank (Entrez)AK058094 AK298119 AK315742 BC005913 BC105594
RefSeq transcript (Entrez)NM_001172357 NM_001172410 NM_003018
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_016968 NG_029659 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)SFTPC
Cluster EST : UnigeneHs.1074 [ NCBI ]
CGAP (NCI)Hs.1074
Alternative Splicing GalleryENSG00000168484
Gene ExpressionSFTPC [ NCBI-GEO ]     SFTPC [ SEEK ]   SFTPC [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11686 (Uniprot)
NextProtP11686  [Medical]  [Publications]
With graphics : InterProP11686
Splice isoforms : SwissVarP11686 (Swissvar)
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)    SURFACT_PALMITOYL (PS00341)   
Domains : Interpro (EBI)BRICHOS_dom    Pulm_surfact_AP    SP-C_palmitoylation_site    Surfactant_protein_propep   
Related proteins : CluSTrP11686
Domain families : Pfam (Sanger)BRICHOS (PF04089)    SP_C-Propep (PF08999)   
Domain families : Pfam (NCBI)pfam04089    pfam08999   
Domain families : Smart (EMBL)BRICHOS (SM01039)  SF_P (SM00019)  
DMDM Disease mutations6440
Blocks (Seattle)P11686
PDB (SRS)2YAD   
PDB (PDBSum)2YAD   
PDB (IMB)2YAD   
PDB (RSDB)2YAD   
Human Protein AtlasENSG00000168484
Peptide AtlasP11686
HPRD01520
IPIIPI00006707   IPI00218499   IPI01008760   IPI00792510   IPI00793845   IPI00939469   IPI00794401   IPI00979021   IPI00974461   
Protein Interaction databases
DIP (DOE-UCLA)P11686
IntAct (EBI)P11686
FunCoupENSG00000168484
BioGRIDSFTPC
IntegromeDBSFTPC
STRING (EMBL)SFTPC
Ontologies - Pathways
QuickGOP11686
Ontology : AmiGOprotein binding  extracellular space  multivesicular body  respiratory gaseous exchange  circadian rhythm  response to glucose  response to lipopolysaccharide  response to retinoic acid  response to vitamin A  protein homodimerization activity  protein homooligomerization  response to glucocorticoid  response to cAMP  response to hyperoxia  response to interleukin-6  response to growth factor  cellular response to mechanical stimulus  cellular response to nitric oxide  alveolar lamellar body  
Ontology : EGO-EBIprotein binding  extracellular space  multivesicular body  respiratory gaseous exchange  circadian rhythm  response to glucose  response to lipopolysaccharide  response to retinoic acid  response to vitamin A  protein homodimerization activity  protein homooligomerization  response to glucocorticoid  response to cAMP  response to hyperoxia  response to interleukin-6  response to growth factor  cellular response to mechanical stimulus  cellular response to nitric oxide  alveolar lamellar body  
Protein Interaction DatabaseSFTPC
DoCM (Curated mutations)SFTPC
Wikipedia pathwaysSFTPC
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerSFTPC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFTPC
dbVarSFTPC
ClinVarSFTPC
1000_GenomesSFTPC 
Exome Variant ServerSFTPC
SNP (GeneSNP Utah)SFTPC
SNP : HGBaseSFTPC
Genetic variants : HAPMAPSFTPC
Genomic Variants (DGV)SFTPC [DGVbeta]
Mutations
ICGC Data PortalSFTPC 
TCGA Data PortalSFTPC 
Tumor PortalSFTPC
Somatic Mutations in Cancer : COSMICSFTPC 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:22019184-22021991
CONAN: Copy Number AnalysisSFTPC 
Mutations and Diseases : HGMDSFTPC
OMIM178500    178620    610913   
MedgenSFTPC
NextProtP11686 [Medical]
GENETestsSFTPC
Disease Genetic AssociationSFTPC
Huge Navigator SFTPC [HugePedia]  SFTPC [HugeCancerGEM]
snp3D : Map Gene to Disease6440
DGIdb (Drug Gene Interaction db)SFTPC
BioCentury BCIQSFTPC
General knowledge
Homologs : HomoloGeneSFTPC
Homology/Alignments : Family Browser (UCSC)SFTPC
Phylogenetic Trees/Animal Genes : TreeFamSFTPC
Chemical/Protein Interactions : CTD6440
Chemical/Pharm GKB GenePA35714
Clinical trialSFTPC
Cancer Resource (Charite)ENSG00000168484
Other databases
Probes
Litterature
PubMed97 Pubmed reference(s) in Entrez
CoreMineSFTPC
GoPubMedSFTPC
iHOPSFTPC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jun 27 12:16:35 CEST 2015

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