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SFXN1 (sideroflexin 1)

Identity

Alias (NCBI)SLC56A1
TCC
HGNC (Hugo) SFXN1
HGNC Alias symbFLJ12876
LocusID (NCBI) 94081
Atlas_Id 73173
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 175478560 and ends at 175529741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC100507412 (-) / SFXN1 (5q35.2)MALAT1 (11q13.1) / SFXN1 (5q35.2)ZFHX3 (16q22.2) / SFXN1 (5q35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SFXN1   16085
Cards
Entrez_Gene (NCBI)SFXN1    sideroflexin 1
AliasesSLC56A1; TCC
GeneCards (Weizmann)SFXN1
Ensembl hg19 (Hinxton)ENSG00000164466 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164466 [Gene_View]  ENSG00000164466 [Sequence]  chr5:175478560-175529741 [Contig_View]  SFXN1 [Vega]
ICGC DataPortalENSG00000164466
TCGA cBioPortalSFXN1
AceView (NCBI)SFXN1
Genatlas (Paris)SFXN1
SOURCE (Princeton)SFXN1
Genetics Home Reference (NIH)SFXN1
Genomic and cartography
GoldenPath hg38 (UCSC)SFXN1  -     chr5:175478560-175529741 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFXN1  -     5q35.2   [Description]    (hg19-Feb_2009)
GoldenPathSFXN1 - 5q35.2 [CytoView hg19]  SFXN1 - 5q35.2 [CytoView hg38]
ImmunoBaseENSG00000164466
Genome Data Viewer NCBISFXN1 [Mapview hg19]  
OMIM615569   
Gene and transcription
Genbank (Entrez)AF327346 AK022287 AK022938 AK025032 AK056915
RefSeq transcript (Entrez)NM_001322977 NM_001322978 NM_001322980 NM_001322981 NM_001322982 NM_001322983 NM_022754
Consensus coding sequences : CCDS (NCBI)SFXN1
Gene ExpressionSFXN1 [ NCBI-GEO ]   SFXN1 [ EBI - ARRAY_EXPRESS ]   SFXN1 [ SEEK ]   SFXN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SFXN1 [ Firebrowse - Broad ]
GenevisibleExpression of SFXN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94081
GTEX Portal (Tissue expression)SFXN1
Human Protein AtlasENSG00000164466-SFXN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9B4
PhosPhoSitePlusQ9H9B4
Domains : Interpro (EBI)Mtc   
Domain families : Pfam (Sanger)SFXNs (PF03820)   
Domain families : Pfam (NCBI)pfam03820   
Conserved Domain (NCBI)SFXN1
SuperfamilyQ9H9B4
AlphaFold pdb e-kbQ9H9B4   
Human Protein Atlas [tissue]ENSG00000164466-SFXN1 [tissue]
HPRD18044
Protein Interaction databases
DIP (DOE-UCLA)Q9H9B4
IntAct (EBI)Q9H9B4
BioGRIDSFXN1
STRING (EMBL)SFXN1
ZODIACSFXN1
Ontologies - Pathways
QuickGOQ9H9B4
Ontology : AmiGOprotein binding  mitochondrion  one-carbon metabolic process  L-serine transmembrane transporter activity  L-serine transport  transmembrane transporter activity  serine transmembrane transporter activity  integral component of mitochondrial inner membrane  integral component of mitochondrial inner membrane  D-serine transport  D-serine transmembrane transporter activity  serine import into mitochondrion  serine import into mitochondrion  mitochondrial transmembrane transport  
Ontology : EGO-EBIprotein binding  mitochondrion  one-carbon metabolic process  L-serine transmembrane transporter activity  L-serine transport  transmembrane transporter activity  serine transmembrane transporter activity  integral component of mitochondrial inner membrane  integral component of mitochondrial inner membrane  D-serine transport  D-serine transmembrane transporter activity  serine import into mitochondrion  serine import into mitochondrion  mitochondrial transmembrane transport  
NDEx NetworkSFXN1
Atlas of Cancer Signalling NetworkSFXN1
Wikipedia pathwaysSFXN1
Orthology - Evolution
OrthoDB94081
GeneTree (enSembl)ENSG00000164466
Phylogenetic Trees/Animal Genes : TreeFamSFXN1
Homologs : HomoloGeneSFXN1
Homology/Alignments : Family Browser (UCSC)SFXN1
Gene fusions - Rearrangements
Fusion : QuiverSFXN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFXN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFXN1
dbVarSFXN1
ClinVarSFXN1
MonarchSFXN1
1000_GenomesSFXN1 
Exome Variant ServerSFXN1
GNOMAD BrowserENSG00000164466
Varsome BrowserSFXN1
ACMGSFXN1 variants
VarityQ9H9B4
Genomic Variants (DGV)SFXN1 [DGVbeta]
DECIPHERSFXN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFXN1 
Mutations
ICGC Data PortalSFXN1 
TCGA Data PortalSFXN1 
Broad Tumor PortalSFXN1
OASIS PortalSFXN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFXN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSFXN1
Mutations and Diseases : HGMDSFXN1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSFXN1
DgiDB (Drug Gene Interaction Database)SFXN1
DoCM (Curated mutations)SFXN1
CIViC (Clinical Interpretations of Variants in Cancer)SFXN1
Cancer3DSFXN1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615569   
Orphanet
DisGeNETSFXN1
MedgenSFXN1
Genetic Testing Registry SFXN1
NextProtQ9H9B4 [Medical]
GENETestsSFXN1
Target ValidationSFXN1
Huge Navigator SFXN1 [HugePedia]
ClinGenSFXN1
Clinical trials, drugs, therapy
MyCancerGenomeSFXN1
Protein Interactions : CTDSFXN1
Pharm GKB GenePA38090
PharosQ9H9B4
Clinical trialSFXN1
Miscellaneous
canSAR (ICR)SFXN1
HarmonizomeSFXN1
DataMed IndexSFXN1
Probes
Litterature
PubMed86 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSFXN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:22 CEST 2021

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