Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SFXN1 (sideroflexin 1)

Identity

Alias_symbol (synonym)FLJ12876
Other aliasTCC
HGNC (Hugo) SFXN1
LocusID (NCBI) 94081
Atlas_Id 73173
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 175478498 and ends at 175529741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC100507412 (-) / SFXN1 (5q35.2)MALAT1 (11q13.1) / SFXN1 (5q35.2)ZFHX3 (16q22.2) / SFXN1 (5q35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFXN1   16085
Cards
Entrez_Gene (NCBI)SFXN1  94081  sideroflexin 1
AliasesTCC
GeneCards (Weizmann)SFXN1
Ensembl hg19 (Hinxton)ENSG00000164466 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164466 [Gene_View]  chr5:175478498-175529741 [Contig_View]  SFXN1 [Vega]
ICGC DataPortalENSG00000164466
TCGA cBioPortalSFXN1
AceView (NCBI)SFXN1
Genatlas (Paris)SFXN1
WikiGenes94081
SOURCE (Princeton)SFXN1
Genetics Home Reference (NIH)SFXN1
Genomic and cartography
GoldenPath hg38 (UCSC)SFXN1  -     chr5:175478498-175529741 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFXN1  -     5q35.2   [Description]    (hg19-Feb_2009)
EnsemblSFXN1 - 5q35.2 [CytoView hg19]  SFXN1 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBISFXN1 [Mapview hg19]  SFXN1 [Mapview hg38]
OMIM615569   
Gene and transcription
Genbank (Entrez)AF327346 AK022287 AK022938 AK025032 AK056915
RefSeq transcript (Entrez)NM_001322977 NM_001322978 NM_001322980 NM_001322981 NM_001322982 NM_001322983 NM_022754
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SFXN1
Cluster EST : UnigeneHs.732081 [ NCBI ]
CGAP (NCI)Hs.732081
Alternative Splicing GalleryENSG00000164466
Gene ExpressionSFXN1 [ NCBI-GEO ]   SFXN1 [ EBI - ARRAY_EXPRESS ]   SFXN1 [ SEEK ]   SFXN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SFXN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94081
GTEX Portal (Tissue expression)SFXN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9B4
Splice isoforms : SwissVarQ9H9B4
PhosPhoSitePlusQ9H9B4
Domains : Interpro (EBI)Mtc   
Domain families : Pfam (Sanger)Mtc (PF03820)   
Domain families : Pfam (NCBI)pfam03820   
Conserved Domain (NCBI)SFXN1
DMDM Disease mutations94081
Blocks (Seattle)SFXN1
SuperfamilyQ9H9B4
Human Protein AtlasENSG00000164466
Peptide AtlasQ9H9B4
HPRD18044
IPIIPI00009368   IPI00963963   IPI00964267   IPI00966083   IPI00964643   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9B4
IntAct (EBI)Q9H9B4
FunCoupENSG00000164466
BioGRIDSFXN1
STRING (EMBL)SFXN1
ZODIACSFXN1
Ontologies - Pathways
QuickGOQ9H9B4
Ontology : AmiGOmitochondrion  mitochondrial inner membrane  iron ion transport  ion transmembrane transporter activity  integral component of membrane  erythrocyte differentiation  ion transmembrane transport  iron ion homeostasis  
Ontology : EGO-EBImitochondrion  mitochondrial inner membrane  iron ion transport  ion transmembrane transporter activity  integral component of membrane  erythrocyte differentiation  ion transmembrane transport  iron ion homeostasis  
NDEx NetworkSFXN1
Atlas of Cancer Signalling NetworkSFXN1
Wikipedia pathwaysSFXN1
Orthology - Evolution
OrthoDB94081
GeneTree (enSembl)ENSG00000164466
Phylogenetic Trees/Animal Genes : TreeFamSFXN1
HOVERGENQ9H9B4
HOGENOMQ9H9B4
Homologs : HomoloGeneSFXN1
Homology/Alignments : Family Browser (UCSC)SFXN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFXN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFXN1
dbVarSFXN1
ClinVarSFXN1
1000_GenomesSFXN1 
Exome Variant ServerSFXN1
ExAC (Exome Aggregation Consortium)SFXN1 (select the gene name)
Genetic variants : HAPMAP94081
Genomic Variants (DGV)SFXN1 [DGVbeta]
DECIPHERSFXN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFXN1 
Mutations
ICGC Data PortalSFXN1 
TCGA Data PortalSFXN1 
Broad Tumor PortalSFXN1
OASIS PortalSFXN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFXN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFXN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SFXN1
DgiDB (Drug Gene Interaction Database)SFXN1
DoCM (Curated mutations)SFXN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFXN1 (select a term)
intoGenSFXN1
Cancer3DSFXN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615569   
Orphanet
MedgenSFXN1
Genetic Testing Registry SFXN1
NextProtQ9H9B4 [Medical]
TSGene94081
GENETestsSFXN1
Target ValidationSFXN1
Huge Navigator SFXN1 [HugePedia]
snp3D : Map Gene to Disease94081
BioCentury BCIQSFXN1
ClinGenSFXN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94081
Chemical/Pharm GKB GenePA38090
Clinical trialSFXN1
Miscellaneous
canSAR (ICR)SFXN1 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFXN1
EVEXSFXN1
GoPubMedSFXN1
iHOPSFXN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:32 CEST 2017

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