Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SFXN2 (sideroflexin 2)

Identity

Other aliasSLC56A2
HGNC (Hugo) SFXN2
LocusID (NCBI) 118980
Atlas_Id 73174
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 102714541 and ends at 102739189 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UBXN2B (8q12.1) / SFXN2 (10q24.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SFXN2   16086
Cards
Entrez_Gene (NCBI)SFXN2  118980  sideroflexin 2
AliasesSLC56A2
GeneCards (Weizmann)SFXN2
Ensembl hg19 (Hinxton)ENSG00000156398 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156398 [Gene_View]  ENSG00000156398 [Sequence]  chr10:102714541-102739189 [Contig_View]  SFXN2 [Vega]
ICGC DataPortalENSG00000156398
TCGA cBioPortalSFXN2
AceView (NCBI)SFXN2
Genatlas (Paris)SFXN2
WikiGenes118980
SOURCE (Princeton)SFXN2
Genetics Home Reference (NIH)SFXN2
Genomic and cartography
GoldenPath hg38 (UCSC)SFXN2  -     chr10:102714541-102739189 +  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFXN2  -     10q24.32   [Description]    (hg19-Feb_2009)
GoldenPathSFXN2 - 10q24.32 [CytoView hg19]  SFXN2 - 10q24.32 [CytoView hg38]
ImmunoBaseENSG00000156398
Mapping of homologs : NCBISFXN2 [Mapview hg19]  SFXN2 [Mapview hg38]
OMIM615570   
Gene and transcription
Genbank (Entrez)AF462052 AK055711 AK308246 BC022091 BP871592
RefSeq transcript (Entrez)NM_001350989 NM_178858
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SFXN2
Cluster EST : UnigeneHs.44070 [ NCBI ]
CGAP (NCI)Hs.44070
Alternative Splicing GalleryENSG00000156398
Gene ExpressionSFXN2 [ NCBI-GEO ]   SFXN2 [ EBI - ARRAY_EXPRESS ]   SFXN2 [ SEEK ]   SFXN2 [ MEM ]
Gene Expression Viewer (FireBrowse)SFXN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118980
GTEX Portal (Tissue expression)SFXN2
Human Protein AtlasENSG00000156398-SFXN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NB2
Splice isoforms : SwissVarQ96NB2
PhosPhoSitePlusQ96NB2
Domains : Interpro (EBI)Mtc   
Domain families : Pfam (Sanger)Mtc (PF03820)   
Domain families : Pfam (NCBI)pfam03820   
Conserved Domain (NCBI)SFXN2
DMDM Disease mutations118980
Blocks (Seattle)SFXN2
SuperfamilyQ96NB2
Human Protein Atlas [tissue]ENSG00000156398-SFXN2 [tissue]
Peptide AtlasQ96NB2
HPRD18045
IPIIPI00043564   
Protein Interaction databases
DIP (DOE-UCLA)Q96NB2
IntAct (EBI)Q96NB2
FunCoupENSG00000156398
BioGRIDSFXN2
STRING (EMBL)SFXN2
ZODIACSFXN2
Ontologies - Pathways
QuickGOQ96NB2
Ontology : AmiGOmitochondrion  amino acid transport  ion transmembrane transporter activity  integral component of membrane  mitochondrial membrane  ion transmembrane transport  mitochondrial transmembrane transport  
Ontology : EGO-EBImitochondrion  amino acid transport  ion transmembrane transporter activity  integral component of membrane  mitochondrial membrane  ion transmembrane transport  mitochondrial transmembrane transport  
NDEx NetworkSFXN2
Atlas of Cancer Signalling NetworkSFXN2
Wikipedia pathwaysSFXN2
Orthology - Evolution
OrthoDB118980
GeneTree (enSembl)ENSG00000156398
Phylogenetic Trees/Animal Genes : TreeFamSFXN2
HOGENOMQ96NB2
Homologs : HomoloGeneSFXN2
Homology/Alignments : Family Browser (UCSC)SFXN2
Gene fusions - Rearrangements
Fusion : QuiverSFXN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFXN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFXN2
dbVarSFXN2
ClinVarSFXN2
1000_GenomesSFXN2 
Exome Variant ServerSFXN2
ExAC (Exome Aggregation Consortium)ENSG00000156398
GNOMAD BrowserENSG00000156398
Varsome BrowserSFXN2
Genetic variants : HAPMAP118980
Genomic Variants (DGV)SFXN2 [DGVbeta]
DECIPHERSFXN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFXN2 
Mutations
ICGC Data PortalSFXN2 
TCGA Data PortalSFXN2 
Broad Tumor PortalSFXN2
OASIS PortalSFXN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFXN2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSFXN2
Mutations and Diseases : HGMDSFXN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SFXN2
DgiDB (Drug Gene Interaction Database)SFXN2
DoCM (Curated mutations)SFXN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFXN2 (select a term)
intoGenSFXN2
Cancer3DSFXN2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615570   
Orphanet
DisGeNETSFXN2
MedgenSFXN2
Genetic Testing Registry SFXN2
NextProtQ96NB2 [Medical]
TSGene118980
GENETestsSFXN2
Target ValidationSFXN2
Huge Navigator SFXN2 [HugePedia]
snp3D : Map Gene to Disease118980
BioCentury BCIQSFXN2
ClinGenSFXN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118980
Chemical/Pharm GKB GenePA38091
Clinical trialSFXN2
Miscellaneous
canSAR (ICR)SFXN2 (select the gene name)
DataMed IndexSFXN2
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFXN2
EVEXSFXN2
GoPubMedSFXN2
iHOPSFXN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:05:02 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.