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SFXN3 (sideroflexin 3)

Identity

Alias_symbol (synonym)SFX3
Other aliasBA108L7.2
HGNC (Hugo) SFXN3
LocusID (NCBI) 81855
Atlas_Id 73175
Location 10q24.31  [Link to chromosome band 10q24]
Location_base_pair Starts at 101031239 and ends at 101041241 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRRX1 (1q24.2) / SFXN3 (10q24.31)SFXN3 (10q24.31) / PSPH (7p11.2)SFXN3 (10q24.31) / RCHY1 (4q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SFXN3   16087
Cards
Entrez_Gene (NCBI)SFXN3  81855  sideroflexin 3
AliasesBA108L7.2; SFX3
GeneCards (Weizmann)SFXN3
Ensembl hg19 (Hinxton)ENSG00000107819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107819 [Gene_View]  chr10:101031239-101041241 [Contig_View]  SFXN3 [Vega]
ICGC DataPortalENSG00000107819
TCGA cBioPortalSFXN3
AceView (NCBI)SFXN3
Genatlas (Paris)SFXN3
WikiGenes81855
SOURCE (Princeton)SFXN3
Genetics Home Reference (NIH)SFXN3
Genomic and cartography
GoldenPath hg38 (UCSC)SFXN3  -     chr10:101031239-101041241 +  10q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFXN3  -     10q24.31   [Description]    (hg19-Feb_2009)
EnsemblSFXN3 - 10q24.31 [CytoView hg19]  SFXN3 - 10q24.31 [CytoView hg38]
Mapping of homologs : NCBISFXN3 [Mapview hg19]  SFXN3 [Mapview hg38]
OMIM615571   
Gene and transcription
Genbank (Entrez)AK074707 AK093011 AK299405 AL701236 BC000124
RefSeq transcript (Entrez)NM_030971
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SFXN3
Cluster EST : UnigeneHs.283844 [ NCBI ]
CGAP (NCI)Hs.283844
Alternative Splicing GalleryENSG00000107819
Gene ExpressionSFXN3 [ NCBI-GEO ]   SFXN3 [ EBI - ARRAY_EXPRESS ]   SFXN3 [ SEEK ]   SFXN3 [ MEM ]
Gene Expression Viewer (FireBrowse)SFXN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81855
GTEX Portal (Tissue expression)SFXN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWM7
Splice isoforms : SwissVarQ9BWM7
PhosPhoSitePlusQ9BWM7
Domains : Interpro (EBI)Mtc   
Domain families : Pfam (Sanger)Mtc (PF03820)   
Domain families : Pfam (NCBI)pfam03820   
Conserved Domain (NCBI)SFXN3
DMDM Disease mutations81855
Blocks (Seattle)SFXN3
SuperfamilyQ9BWM7
Human Protein AtlasENSG00000107819
Peptide AtlasQ9BWM7
HPRD15329
IPIIPI00871988   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWM7
IntAct (EBI)Q9BWM7
FunCoupENSG00000107819
BioGRIDSFXN3
STRING (EMBL)SFXN3
ZODIACSFXN3
Ontologies - Pathways
QuickGOQ9BWM7
Ontology : AmiGOmitochondrion  ion transmembrane transporter activity  integral component of membrane  mitochondrial membrane  ion transmembrane transport  iron ion homeostasis  
Ontology : EGO-EBImitochondrion  ion transmembrane transporter activity  integral component of membrane  mitochondrial membrane  ion transmembrane transport  iron ion homeostasis  
NDEx NetworkSFXN3
Atlas of Cancer Signalling NetworkSFXN3
Wikipedia pathwaysSFXN3
Orthology - Evolution
OrthoDB81855
GeneTree (enSembl)ENSG00000107819
Phylogenetic Trees/Animal Genes : TreeFamSFXN3
HOVERGENQ9BWM7
HOGENOMQ9BWM7
Homologs : HomoloGeneSFXN3
Homology/Alignments : Family Browser (UCSC)SFXN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFXN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SFXN3
dbVarSFXN3
ClinVarSFXN3
1000_GenomesSFXN3 
Exome Variant ServerSFXN3
ExAC (Exome Aggregation Consortium)SFXN3 (select the gene name)
Genetic variants : HAPMAP81855
Genomic Variants (DGV)SFXN3 [DGVbeta]
DECIPHERSFXN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFXN3 
Mutations
ICGC Data PortalSFXN3 
TCGA Data PortalSFXN3 
Broad Tumor PortalSFXN3
OASIS PortalSFXN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFXN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSFXN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SFXN3
DgiDB (Drug Gene Interaction Database)SFXN3
DoCM (Curated mutations)SFXN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFXN3 (select a term)
intoGenSFXN3
Cancer3DSFXN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615571   
Orphanet
MedgenSFXN3
Genetic Testing Registry SFXN3
NextProtQ9BWM7 [Medical]
TSGene81855
GENETestsSFXN3
Target ValidationSFXN3
Huge Navigator SFXN3 [HugePedia]
snp3D : Map Gene to Disease81855
BioCentury BCIQSFXN3
ClinGenSFXN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81855
Chemical/Pharm GKB GenePA38092
Clinical trialSFXN3
Miscellaneous
canSAR (ICR)SFXN3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFXN3
EVEXSFXN3
GoPubMedSFXN3
iHOPSFXN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:38:29 CEST 2017

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