Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SFXN4 (sideroflexin 4)

Identity

Alias (NCBI)BCRM1
COXPD18
SLC56A4
HGNC (Hugo) SFXN4
LocusID (NCBI) 119559
Atlas_Id 73176
Location 10q26.11  [Link to chromosome band 10q26]
Location_base_pair Starts at 119140913 and ends at 119165692 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EIF3A (10q26.11) / SFXN4 (10q26.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  EIF3A/SFXN4 (10q26)


External links

Nomenclature
HGNC (Hugo)SFXN4   16088
Cards
Entrez_Gene (NCBI)SFXN4    sideroflexin 4
AliasesBCRM1; COXPD18; SLC56A4
GeneCards (Weizmann)SFXN4
Ensembl hg19 (Hinxton)ENSG00000183605 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183605 [Gene_View]  ENSG00000183605 [Sequence]  chr10:119140913-119165692 [Contig_View]  SFXN4 [Vega]
ICGC DataPortalENSG00000183605
TCGA cBioPortalSFXN4
AceView (NCBI)SFXN4
Genatlas (Paris)SFXN4
SOURCE (Princeton)SFXN4
Genetics Home Reference (NIH)SFXN4
Genomic and cartography
GoldenPath hg38 (UCSC)SFXN4  -     chr10:119140913-119165692 -  10q26.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SFXN4  -     10q26.11   [Description]    (hg19-Feb_2009)
GoldenPathSFXN4 - 10q26.11 [CytoView hg19]  SFXN4 - 10q26.11 [CytoView hg38]
ImmunoBaseENSG00000183605
genome Data Viewer NCBISFXN4 [Mapview hg19]  
OMIM615564   615578   
Gene and transcription
Genbank (Entrez)AA401250 AF336980 AK095295 AW249181 AY269785
RefSeq transcript (Entrez)NM_178867 NM_213649
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SFXN4
Alternative Splicing GalleryENSG00000183605
Gene ExpressionSFXN4 [ NCBI-GEO ]   SFXN4 [ EBI - ARRAY_EXPRESS ]   SFXN4 [ SEEK ]   SFXN4 [ MEM ]
Gene Expression Viewer (FireBrowse)SFXN4 [ Firebrowse - Broad ]
GenevisibleExpression of SFXN4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119559
GTEX Portal (Tissue expression)SFXN4
Human Protein AtlasENSG00000183605-SFXN4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4A7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4A7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4A7
Splice isoforms : SwissVarQ6P4A7
PhosPhoSitePlusQ6P4A7
Domains : Interpro (EBI)Mtc    SFXN4   
Domain families : Pfam (Sanger)Mtc (PF03820)   
Domain families : Pfam (NCBI)pfam03820   
Conserved Domain (NCBI)SFXN4
Blocks (Seattle)SFXN4
SuperfamilyQ6P4A7
Human Protein Atlas [tissue]ENSG00000183605-SFXN4 [tissue]
Peptide AtlasQ6P4A7
HPRD18046
IPIIPI00412741   IPI00607781   IPI00743741   IPI00334130   IPI00889690   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4A7
IntAct (EBI)Q6P4A7
BioGRIDSFXN4
STRING (EMBL)SFXN4
ZODIACSFXN4
Ontologies - Pathways
QuickGOQ6P4A7
Ontology : AmiGOmitochondrion  mitochondrial inner membrane  amino acid transport  ion transmembrane transporter activity  integral component of membrane  ion transmembrane transport  
Ontology : EGO-EBImitochondrion  mitochondrial inner membrane  amino acid transport  ion transmembrane transporter activity  integral component of membrane  ion transmembrane transport  
NDEx NetworkSFXN4
Atlas of Cancer Signalling NetworkSFXN4
Wikipedia pathwaysSFXN4
Orthology - Evolution
OrthoDB119559
GeneTree (enSembl)ENSG00000183605
Phylogenetic Trees/Animal Genes : TreeFamSFXN4
HOGENOMQ6P4A7
Homologs : HomoloGeneSFXN4
Homology/Alignments : Family Browser (UCSC)SFXN4
Gene fusions - Rearrangements
Fusion : QuiverSFXN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSFXN4 [hg38]
dbVarSFXN4
ClinVarSFXN4
MonarchSFXN4
1000_GenomesSFXN4 
Exome Variant ServerSFXN4
GNOMAD BrowserENSG00000183605
Varsome BrowserSFXN4
Genomic Variants (DGV)SFXN4 [DGVbeta]
DECIPHERSFXN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSFXN4 
Mutations
ICGC Data PortalSFXN4 
TCGA Data PortalSFXN4 
Broad Tumor PortalSFXN4
OASIS PortalSFXN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSFXN4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSFXN4
Mutations and Diseases : HGMDSFXN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SFXN4
DgiDB (Drug Gene Interaction Database)SFXN4
DoCM (Curated mutations)SFXN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SFXN4 (select a term)
intoGenSFXN4
Cancer3DSFXN4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615564    615578   
Orphanet22609   
DisGeNETSFXN4
MedgenSFXN4
Genetic Testing Registry SFXN4
NextProtQ6P4A7 [Medical]
GENETestsSFXN4
Target ValidationSFXN4
Huge Navigator SFXN4 [HugePedia]
ClinGenSFXN4
Clinical trials, drugs, therapy
MyCancerGenomeSFXN4
Protein Interactions : CTD
Pharm GKB GenePA38093
Clinical trialSFXN4
Miscellaneous
canSAR (ICR)SFXN4 (select the gene name)
HarmonizomeSFXN4
DataMed IndexSFXN4
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSFXN4
EVEXSFXN4
GoPubMedSFXN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:26:35 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.