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SGCG (sarcoglycan gamma)

Identity

Alias_namesDMDA1
MAM
LGMD2C
sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)
Alias_symbol (synonym)SCARMD2
DAGA4
SCG3
DMDA
TYPE
A4
MGC130048
Other alias35DAG
gamma-SG
HGNC (Hugo) SGCG
LocusID (NCBI) 6445
Atlas_Id 73180
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 23180921 and ends at 23325165 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SGCG (13q12.12) / CASP7 (10q25.3)SGCG (13q12.12) / SGCG (13q12.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SGCG   10809
LRG (Locus Reference Genomic)LRG_207
Cards
Entrez_Gene (NCBI)SGCG  6445  sarcoglycan gamma
Aliases35DAG; A4; DAGA4; DMDA; 
DMDA1; LGMD2C; MAM; SCARMD2; SCG3; gamma-SG
GeneCards (Weizmann)SGCG
Ensembl hg19 (Hinxton)ENSG00000102683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102683 [Gene_View]  chr13:23180921-23325165 [Contig_View]  SGCG [Vega]
ICGC DataPortalENSG00000102683
TCGA cBioPortalSGCG
AceView (NCBI)SGCG
Genatlas (Paris)SGCG
WikiGenes6445
SOURCE (Princeton)SGCG
Genetics Home Reference (NIH)SGCG
Genomic and cartography
GoldenPath hg38 (UCSC)SGCG  -     chr13:23180921-23325165 +  13q12.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGCG  -     13q12.12   [Description]    (hg19-Feb_2009)
EnsemblSGCG - 13q12.12 [CytoView hg19]  SGCG - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBISGCG [Mapview hg19]  SGCG [Mapview hg38]
OMIM253700   608896   
Gene and transcription
Genbank (Entrez)AK290620 AK316579 BC074777 BC074778 BC109321
RefSeq transcript (Entrez)NM_000231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SGCG
Cluster EST : UnigeneHs.37167 [ NCBI ]
CGAP (NCI)Hs.37167
Alternative Splicing GalleryENSG00000102683
Gene ExpressionSGCG [ NCBI-GEO ]   SGCG [ EBI - ARRAY_EXPRESS ]   SGCG [ SEEK ]   SGCG [ MEM ]
Gene Expression Viewer (FireBrowse)SGCG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6445
GTEX Portal (Tissue expression)SGCG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13326   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13326  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13326
Splice isoforms : SwissVarQ13326
PhosPhoSitePlusQ13326
Domains : Interpro (EBI)Sarcoglycan    SGCG   
Domain families : Pfam (Sanger)Sarcoglycan_1 (PF04790)   
Domain families : Pfam (NCBI)pfam04790   
Conserved Domain (NCBI)SGCG
DMDM Disease mutations6445
Blocks (Seattle)SGCG
SuperfamilyQ13326
Human Protein AtlasENSG00000102683
Peptide AtlasQ13326
HPRD07039
IPIIPI00218559   
Protein Interaction databases
DIP (DOE-UCLA)Q13326
IntAct (EBI)Q13326
FunCoupENSG00000102683
BioGRIDSGCG
STRING (EMBL)SGCG
ZODIACSGCG
Ontologies - Pathways
QuickGOQ13326
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  cytoskeleton  plasma membrane  muscle organ development  sarcoglycan complex  integral component of membrane  sarcolemma  cardiac muscle tissue development  muscle cell development  heart contraction  membrane organization  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  cytoskeleton  plasma membrane  muscle organ development  sarcoglycan complex  integral component of membrane  sarcolemma  cardiac muscle tissue development  muscle cell development  heart contraction  membrane organization  
Pathways : KEGGHypertrophic cardiomyopathy (HCM)    Arrhythmogenic right ventricular cardiomyopathy (ARVC)    Dilated cardiomyopathy    Viral myocarditis   
NDEx NetworkSGCG
Atlas of Cancer Signalling NetworkSGCG
Wikipedia pathwaysSGCG
Orthology - Evolution
OrthoDB6445
GeneTree (enSembl)ENSG00000102683
Phylogenetic Trees/Animal Genes : TreeFamSGCG
HOVERGENQ13326
HOGENOMQ13326
Homologs : HomoloGeneSGCG
Homology/Alignments : Family Browser (UCSC)SGCG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGCG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGCG
dbVarSGCG
ClinVarSGCG
1000_GenomesSGCG 
Exome Variant ServerSGCG
ExAC (Exome Aggregation Consortium)SGCG (select the gene name)
Genetic variants : HAPMAP6445
Genomic Variants (DGV)SGCG [DGVbeta]
DECIPHERSGCG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGCG 
Mutations
ICGC Data PortalSGCG 
TCGA Data PortalSGCG 
Broad Tumor PortalSGCG
OASIS PortalSGCG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSGCG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSGCG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SGCG
DgiDB (Drug Gene Interaction Database)SGCG
DoCM (Curated mutations)SGCG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SGCG (select a term)
intoGenSGCG
Cancer3DSGCG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM253700    608896   
Orphanet8716   
MedgenSGCG
Genetic Testing Registry SGCG
NextProtQ13326 [Medical]
TSGene6445
GENETestsSGCG
Target ValidationSGCG
Huge Navigator SGCG [HugePedia]
snp3D : Map Gene to Disease6445
BioCentury BCIQSGCG
ClinGenSGCG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6445
Chemical/Pharm GKB GenePA35720
Clinical trialSGCG
Miscellaneous
canSAR (ICR)SGCG (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSGCG
EVEXSGCG
GoPubMedSGCG
iHOPSGCG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:33 CEST 2017

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