Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SGCZ (sarcoglycan zeta)

Identity

Alias_symbol (synonym)ZSG1
Other alias
HGNC (Hugo) SGCZ
LocusID (NCBI) 137868
Atlas_Id 73181
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 14084835 and ends at 15238283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SIN3A (15q24.2) / SGCZ (8p22)VPS13B (8q22.2) / SGCZ (8p22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SGCZ   14075
LRG (Locus Reference Genomic)LRG_208
Cards
Entrez_Gene (NCBI)SGCZ  137868  sarcoglycan zeta
AliasesZSG1
GeneCards (Weizmann)SGCZ
Ensembl hg19 (Hinxton)ENSG00000185053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185053 [Gene_View]  chr8:14084835-15238283 [Contig_View]  SGCZ [Vega]
ICGC DataPortalENSG00000185053
TCGA cBioPortalSGCZ
AceView (NCBI)SGCZ
Genatlas (Paris)SGCZ
WikiGenes137868
SOURCE (Princeton)SGCZ
Genetics Home Reference (NIH)SGCZ
Genomic and cartography
GoldenPath hg38 (UCSC)SGCZ  -     chr8:14084835-15238283 -  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGCZ  -     8p22   [Description]    (hg19-Feb_2009)
EnsemblSGCZ - 8p22 [CytoView hg19]  SGCZ - 8p22 [CytoView hg38]
Mapping of homologs : NCBISGCZ [Mapview hg19]  SGCZ [Mapview hg38]
OMIM608113   
Gene and transcription
Genbank (Entrez)AI580904 AY028700 AY502063 BC069459 BC125037
RefSeq transcript (Entrez)NM_001322879 NM_001322880 NM_001322881 NM_139167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SGCZ
Cluster EST : UnigeneHs.676196 [ NCBI ]
CGAP (NCI)Hs.676196
Alternative Splicing GalleryENSG00000185053
Gene ExpressionSGCZ [ NCBI-GEO ]   SGCZ [ EBI - ARRAY_EXPRESS ]   SGCZ [ SEEK ]   SGCZ [ MEM ]
Gene Expression Viewer (FireBrowse)SGCZ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137868
GTEX Portal (Tissue expression)SGCZ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LD1
Splice isoforms : SwissVarQ96LD1
PhosPhoSitePlusQ96LD1
Domains : Interpro (EBI)Sarcoglycan    Sgcz   
Domain families : Pfam (Sanger)Sarcoglycan_1 (PF04790)   
Domain families : Pfam (NCBI)pfam04790   
Conserved Domain (NCBI)SGCZ
DMDM Disease mutations137868
Blocks (Seattle)SGCZ
SuperfamilyQ96LD1
Human Protein AtlasENSG00000185053
Peptide AtlasQ96LD1
HPRD12165
IPIIPI00793580   IPI00064994   IPI00795239   
Protein Interaction databases
DIP (DOE-UCLA)Q96LD1
IntAct (EBI)Q96LD1
FunCoupENSG00000185053
BioGRIDSGCZ
STRING (EMBL)SGCZ
ZODIACSGCZ
Ontologies - Pathways
QuickGOQ96LD1
Ontology : AmiGOcytoplasm  cytoskeleton  muscle organ development  sarcoglycan complex  integral component of membrane  sarcolemma  muscle cell cellular homeostasis  cardiac muscle tissue development  muscle cell development  heart contraction  membrane organization  
Ontology : EGO-EBIcytoplasm  cytoskeleton  muscle organ development  sarcoglycan complex  integral component of membrane  sarcolemma  muscle cell cellular homeostasis  cardiac muscle tissue development  muscle cell development  heart contraction  membrane organization  
NDEx NetworkSGCZ
Atlas of Cancer Signalling NetworkSGCZ
Wikipedia pathwaysSGCZ
Orthology - Evolution
OrthoDB137868
GeneTree (enSembl)ENSG00000185053
Phylogenetic Trees/Animal Genes : TreeFamSGCZ
HOVERGENQ96LD1
HOGENOMQ96LD1
Homologs : HomoloGeneSGCZ
Homology/Alignments : Family Browser (UCSC)SGCZ
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGCZ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGCZ
dbVarSGCZ
ClinVarSGCZ
1000_GenomesSGCZ 
Exome Variant ServerSGCZ
ExAC (Exome Aggregation Consortium)SGCZ (select the gene name)
Genetic variants : HAPMAP137868
Genomic Variants (DGV)SGCZ [DGVbeta]
DECIPHERSGCZ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGCZ 
Mutations
ICGC Data PortalSGCZ 
TCGA Data PortalSGCZ 
Broad Tumor PortalSGCZ
OASIS PortalSGCZ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSGCZ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSGCZ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SGCZ
DgiDB (Drug Gene Interaction Database)SGCZ
DoCM (Curated mutations)SGCZ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SGCZ (select a term)
intoGenSGCZ
Cancer3DSGCZ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608113   
Orphanet
MedgenSGCZ
Genetic Testing Registry SGCZ
NextProtQ96LD1 [Medical]
TSGene137868
GENETestsSGCZ
Target ValidationSGCZ
Huge Navigator SGCZ [HugePedia]
snp3D : Map Gene to Disease137868
BioCentury BCIQSGCZ
ClinGenSGCZ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137868
Chemical/Pharm GKB GenePA38378
Clinical trialSGCZ
Miscellaneous
canSAR (ICR)SGCZ (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSGCZ
EVEXSGCZ
GoPubMedSGCZ
iHOPSGCZ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:33 CEST 2017

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