Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SGCZ (sarcoglycan zeta)

Identity

Alias (NCBI)ZSG1
HGNC (Hugo) SGCZ
HGNC Alias symbZSG1
LocusID (NCBI) 137868
Atlas_Id 73181
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 14084845 and ends at 15238431 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SIN3A (15q24.2) / SGCZ (8p22)VPS13B (8q22.2) / SGCZ (8p22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SGCZ   14075
LRG (Locus Reference Genomic)LRG_208
Cards
Entrez_Gene (NCBI)SGCZ    sarcoglycan zeta
AliasesZSG1
GeneCards (Weizmann)SGCZ
Ensembl hg19 (Hinxton)ENSG00000185053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185053 [Gene_View]  ENSG00000185053 [Sequence]  chr8:14084845-15238431 [Contig_View]  SGCZ [Vega]
ICGC DataPortalENSG00000185053
TCGA cBioPortalSGCZ
AceView (NCBI)SGCZ
Genatlas (Paris)SGCZ
SOURCE (Princeton)SGCZ
Genetics Home Reference (NIH)SGCZ
Genomic and cartography
GoldenPath hg38 (UCSC)SGCZ  -     chr8:14084845-15238431 -  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGCZ  -     8p22   [Description]    (hg19-Feb_2009)
GoldenPathSGCZ - 8p22 [CytoView hg19]  SGCZ - 8p22 [CytoView hg38]
ImmunoBaseENSG00000185053
Genome Data Viewer NCBISGCZ [Mapview hg19]  
OMIM608113   
Gene and transcription
Genbank (Entrez)AI580904 AY028700 AY502063 BC069459 BC125037
RefSeq transcript (Entrez)NM_001322879 NM_001322880 NM_001322881 NM_139167
Consensus coding sequences : CCDS (NCBI)SGCZ
Gene ExpressionSGCZ [ NCBI-GEO ]   SGCZ [ EBI - ARRAY_EXPRESS ]   SGCZ [ SEEK ]   SGCZ [ MEM ]
Gene Expression Viewer (FireBrowse)SGCZ [ Firebrowse - Broad ]
GenevisibleExpression of SGCZ in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137868
GTEX Portal (Tissue expression)SGCZ
Human Protein AtlasENSG00000185053-SGCZ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LD1
PhosPhoSitePlusQ96LD1
Domains : Interpro (EBI)Sarcoglycan    Sarcoglycan_gamma/delta/zeta    Sgcz   
Domain families : Pfam (Sanger)Sarcoglycan_1 (PF04790)   
Domain families : Pfam (NCBI)pfam04790   
Conserved Domain (NCBI)SGCZ
SuperfamilyQ96LD1
AlphaFold pdb e-kbQ96LD1   
Human Protein Atlas [tissue]ENSG00000185053-SGCZ [tissue]
HPRD12165
Protein Interaction databases
DIP (DOE-UCLA)Q96LD1
IntAct (EBI)Q96LD1
BioGRIDSGCZ
STRING (EMBL)SGCZ
ZODIACSGCZ
Ontologies - Pathways
QuickGOQ96LD1
Ontology : AmiGOcytoplasm  cytoskeleton  sarcoglycan complex  sarcoglycan complex  integral component of membrane  sarcolemma  muscle cell cellular homeostasis  cardiac muscle tissue development  muscle cell development  heart contraction  membrane organization  
Ontology : EGO-EBIcytoplasm  cytoskeleton  sarcoglycan complex  sarcoglycan complex  integral component of membrane  sarcolemma  muscle cell cellular homeostasis  cardiac muscle tissue development  muscle cell development  heart contraction  membrane organization  
NDEx NetworkSGCZ
Atlas of Cancer Signalling NetworkSGCZ
Wikipedia pathwaysSGCZ
Orthology - Evolution
OrthoDB137868
GeneTree (enSembl)ENSG00000185053
Phylogenetic Trees/Animal Genes : TreeFamSGCZ
Homologs : HomoloGeneSGCZ
Homology/Alignments : Family Browser (UCSC)SGCZ
Gene fusions - Rearrangements
Fusion : QuiverSGCZ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGCZ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGCZ
dbVarSGCZ
ClinVarSGCZ
MonarchSGCZ
1000_GenomesSGCZ 
Exome Variant ServerSGCZ
GNOMAD BrowserENSG00000185053
Varsome BrowserSGCZ
ACMGSGCZ variants
VarityQ96LD1
Genomic Variants (DGV)SGCZ [DGVbeta]
DECIPHERSGCZ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGCZ 
Mutations
ICGC Data PortalSGCZ 
TCGA Data PortalSGCZ 
Broad Tumor PortalSGCZ
OASIS PortalSGCZ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSGCZ  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSGCZ
Mutations and Diseases : HGMDSGCZ
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSGCZ
DgiDB (Drug Gene Interaction Database)SGCZ
DoCM (Curated mutations)SGCZ
CIViC (Clinical Interpretations of Variants in Cancer)SGCZ
Cancer3DSGCZ
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608113   
Orphanet
DisGeNETSGCZ
MedgenSGCZ
Genetic Testing Registry SGCZ
NextProtQ96LD1 [Medical]
GENETestsSGCZ
Target ValidationSGCZ
Huge Navigator SGCZ [HugePedia]
ClinGenSGCZ
Clinical trials, drugs, therapy
MyCancerGenomeSGCZ
Protein Interactions : CTDSGCZ
Pharm GKB GenePA38378
PharosQ96LD1
Clinical trialSGCZ
Miscellaneous
canSAR (ICR)SGCZ
HarmonizomeSGCZ
DataMed IndexSGCZ
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSGCZ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:20:23 CEST 2021

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